| Definition | Lactobacillus plantarum WCFS1, complete genome. |
|---|---|
| Accession | NC_004567 |
| Length | 3,308,274 |
Click here to switch to the map view.
The map label for this gene is 28379447
Identifier: 28379447
GI number: 28379447
Start: 2686054
End: 2686578
Strand: Direct
Name: 28379447
Synonym: lp_3019
Alternate gene names: NA
Gene position: 2686054-2686578 (Clockwise)
Preceding gene: 28379445
Following gene: 28379448
Centisome position: 81.19
GC content: 44.19
Gene sequence:
>525_bases ATGAAAAAAATTCTGATTCCGATTATCACTGTTCTTATTATCGGTACCATTGTTGGTCTCAGCACCCTACACCGCACCCC GCGAGCCACCACAACTACGGTTCACAAATCACGCGTTATCCAACAACCACAACCGATTACCGAAACGACCATTGCTAAAC AGCCTGCTTTAAAATACAGCTGCATTATTTATTACGCGATCAAGCACTTAAAGATTCAGCGTTGGCAAGAAGTTAGTGAT TTCAGCTTGGGTTGGCAGGTCGAAATTTACACTGACCAGGGGCAAACTAAGTATCTGGTTTGGTCTGATAAACACATTAA GGCCGATGCCAAGCAACTCCAGCCGAACTGGTTCACACTCAAAAATGACCAGGTCACTTATGACAGCTTTGGTGTTCATA CTTTTAAAAAAGATCTGACTGCCACAGTCAGTATGAGGACCATTCTAGCTCAGATCAAGCGTGACCACGCGACGAAAACC GTTCGCCACATGCCAACTAACCTTGTAATCAAAGATCATCGTTGA
Upstream 100 bases:
>100_bases TTTTAAATAGTAATCATTACGTTTTAAAGAATAGCAATAAATTTCATTCTTGTAAATAGTAATATTTACGTTTTACAATT TTATTCGTTAGGAGTTTCTT
Downstream 100 bases:
>100_bases ACACGCTTTAAGTTAACTTTTCCATTCTCAGGAGGATTGGAAAAGTTTTTTTATCCACGTGTTTTCCGACCCATTTACCG TATTTAGTTAGTGTCTACTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 174; Mature: 174
Protein sequence:
>174_residues MKKILIPIITVLIIGTIVGLSTLHRTPRATTTTVHKSRVIQQPQPITETTIAKQPALKYSCIIYYAIKHLKIQRWQEVSD FSLGWQVEIYTDQGQTKYLVWSDKHIKADAKQLQPNWFTLKNDQVTYDSFGVHTFKKDLTATVSMRTILAQIKRDHATKT VRHMPTNLVIKDHR
Sequences:
>Translated_174_residues MKKILIPIITVLIIGTIVGLSTLHRTPRATTTTVHKSRVIQQPQPITETTIAKQPALKYSCIIYYAIKHLKIQRWQEVSD FSLGWQVEIYTDQGQTKYLVWSDKHIKADAKQLQPNWFTLKNDQVTYDSFGVHTFKKDLTATVSMRTILAQIKRDHATKT VRHMPTNLVIKDHR >Mature_174_residues MKKILIPIITVLIIGTIVGLSTLHRTPRATTTTVHKSRVIQQPQPITETTIAKQPALKYSCIIYYAIKHLKIQRWQEVSD FSLGWQVEIYTDQGQTKYLVWSDKHIKADAKQLQPNWFTLKNDQVTYDSFGVHTFKKDLTATVSMRTILAQIKRDHATKT VRHMPTNLVIKDHR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20121; Mature: 20121
Theoretical pI: Translated: 10.58; Mature: 10.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKILIPIITVLIIGTIVGLSTLHRTPRATTTTVHKSRVIQQPQPITETTIAKQPALKYS CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCHHH CIIYYAIKHLKIQRWQEVSDFSLGWQVEIYTDQGQTKYLVWSDKHIKADAKQLQPNWFTL HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHCCCCEEEE KNDQVTYDSFGVHTFKKDLTATVSMRTILAQIKRDHATKTVRHMPTNLVIKDHR ECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC >Mature Secondary Structure MKKILIPIITVLIIGTIVGLSTLHRTPRATTTTVHKSRVIQQPQPITETTIAKQPALKYS CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCHHH CIIYYAIKHLKIQRWQEVSDFSLGWQVEIYTDQGQTKYLVWSDKHIKADAKQLQPNWFTL HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHCCCCEEEE KNDQVTYDSFGVHTFKKDLTATVSMRTILAQIKRDHATKTVRHMPTNLVIKDHR ECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA