| Definition | Lactobacillus plantarum WCFS1, complete genome. |
|---|---|
| Accession | NC_004567 |
| Length | 3,308,274 |
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The map label for this gene is 28379445
Identifier: 28379445
GI number: 28379445
Start: 2684714
End: 2685061
Strand: Direct
Name: 28379445
Synonym: lp_3017
Alternate gene names: NA
Gene position: 2684714-2685061 (Clockwise)
Preceding gene: 28379443
Following gene: 28379447
Centisome position: 81.15
GC content: 48.28
Gene sequence:
>348_bases ATGACCACCATGCAATTGATTCATCCACAATGGCTGTTAATAAAATCGGGGCTCAAAACAATTGAAATCCGTTTAAACGA TGCAAAACGCCAAGCCTTACAAGTCGGTGACATTGTAAATTTCATCGATCTGACGACTGGCCAGCAGCTCACCACTCAGC TCATCGACATCACGCGTTTCGCTAGTTTTGAATCCTTACTGAGCGAATACACTGCCGTTCAAGTCGGCAGTGCCCCGGGA ACGCCGGTAACACAGATGGTTCAAGAAATGCTAACGTTGTATTCCCCTGTCCAAGTTGCGCAATCGGGCGTCGTCGCCTT GCAGGTCCGTCCCTTAATCGGACAATAA
Upstream 100 bases:
>100_bases ACTAATATCCGGTGTTCAGGCACATCATTGCCATTATTTAGGCCCCTATTTCGTTAGTTATCCACTATAATTAAGACTAA ACTGATTAGGAGGACGTTCA
Downstream 100 bases:
>100_bases CTGGTTGAGCTGGCGATACTGTGCCAACATCCACTGTTGATAAGTCAACTTAGCTGGCATGGTTTCAGTCACATTCAACA CTGGCACCTGATTCTTCTTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 115; Mature: 114
Protein sequence:
>115_residues MTTMQLIHPQWLLIKSGLKTIEIRLNDAKRQALQVGDIVNFIDLTTGQQLTTQLIDITRFASFESLLSEYTAVQVGSAPG TPVTQMVQEMLTLYSPVQVAQSGVVALQVRPLIGQ
Sequences:
>Translated_115_residues MTTMQLIHPQWLLIKSGLKTIEIRLNDAKRQALQVGDIVNFIDLTTGQQLTTQLIDITRFASFESLLSEYTAVQVGSAPG TPVTQMVQEMLTLYSPVQVAQSGVVALQVRPLIGQ >Mature_114_residues TTMQLIHPQWLLIKSGLKTIEIRLNDAKRQALQVGDIVNFIDLTTGQQLTTQLIDITRFASFESLLSEYTAVQVGSAPGT PVTQMVQEMLTLYSPVQVAQSGVVALQVRPLIGQ
Specific function: Unknown
COG id: COG4043
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12654; Mature: 12523
Theoretical pI: Translated: 5.76; Mature: 5.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTMQLIHPQWLLIKSGLKTIEIRLNDAKRQALQVGDIVNFIDLTTGQQLTTQLIDITRF CCCCHHHCCHHHEECCCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH ASFESLLSEYTAVQVGSAPGTPVTQMVQEMLTLYSPVQVAQSGVVALQVRPLIGQ HHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHCHHHHHHCCEEEEEEECCCCC >Mature Secondary Structure TTMQLIHPQWLLIKSGLKTIEIRLNDAKRQALQVGDIVNFIDLTTGQQLTTQLIDITRF CCCHHHCCHHHEECCCCEEEEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH ASFESLLSEYTAVQVGSAPGTPVTQMVQEMLTLYSPVQVAQSGVVALQVRPLIGQ HHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHCHHHHHHCCEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA