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The map label for this gene is ytrB [H]

Identifier: 28379235

GI number: 28379235

Start: 2441177

End: 2442055

Strand: Direct

Name: ytrB [H]

Synonym: lp_2743

Alternate gene names: 28379235

Gene position: 2441177-2442055 (Clockwise)

Preceding gene: 28379234

Following gene: 28379236

Centisome position: 73.79

GC content: 43.57

Gene sequence:

>879_bases
ATGAGTATTCAAGTTCAGGCTGTCCAGCAGGCCTTTCGCGGTCAAACCGTCCTGGATAATCTTAACCTAACGATCAAACC
AAACACGATTTACGGTTTGCTAGGCCGCAATGGTGCTGGTAAAAGTACCTTGCTGAACATTATCAGCAATCGTATCTTTG
CTGACAGCGGAACGGTCACCATGGACAACGAATCCATGTGTGATAACGACCGCACGTTAGGAAAGGTTTACTTGATGAGT
GAAGTTAACCTCTATTCTGAGCGTTCCCGGGTCAAACAACTGTTTAAAACCACCGCACTACTCTATGGTGATTTTAATGA
CACTTATGCTAAAAAACTAGCACAAACCTTTGGCCTCGATTTAAACGCGCGATTTGGCAAATTATCGACGGGTTACCGAA
CAATTTTTAAACTGATTATTGCGTTATGTGTACCGGCTGAATACATCTTTTTAGATGAACCAGTCCTCGGTCTGGATGCT
AATCACCGCGAAATTTTCTATCAAGAACTGATTGAAACCTATAGTGACCATCCCCGCACATTCGTGATTTCGACTCATCT
CATTGAAGAAATTACGAACTTGATTGAACATGTCTTTGTGCTGGACCATCATCATATTATTGTTGATGGTGATGTCACCG
ACATCCTAGGGCAATCTTACGCGGTAACTGGTCCACAAACTGATGTCAGCACTTATACGGATGGTTTAAATATTATCGGC
AAGGATCATCTTGGCGGAATTACGGCCCACTACGTTTACGGGCCATTAGATAACGACCGACCAATTCCTGATACGGTCAC
GGTCGAGCATCTGGACCTACAAAAACTATTTGTTAACCTGACTAATACCAAGGAGGAGGCCGCCGCTCATGTCAATTAA

Upstream 100 bases:

>100_bases
TCTACACCGACTACGTTAAAAAACTAGTCGCTGAAGCACAAAAGCTCCACATTACGCAAGATGAATTAGCTAAATTAATT
GAACGGGGGTTTTCCGAATC

Downstream 100 bases:

>100_bases
GGTTCGCAACACCACCCGTTATTTATTAACGGAACAATTGAAAATGACGGGGTGGTCGGTACTCGCTTTATTCGTCGTAT
TCGGAATACTACCGCTACTA

Product: ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MSIQVQAVQQAFRGQTVLDNLNLTIKPNTIYGLLGRNGAGKSTLLNIISNRIFADSGTVTMDNESMCDNDRTLGKVYLMS
EVNLYSERSRVKQLFKTTALLYGDFNDTYAKKLAQTFGLDLNARFGKLSTGYRTIFKLIIALCVPAEYIFLDEPVLGLDA
NHREIFYQELIETYSDHPRTFVISTHLIEEITNLIEHVFVLDHHHIIVDGDVTDILGQSYAVTGPQTDVSTYTDGLNIIG
KDHLGGITAHYVYGPLDNDRPIPDTVTVEHLDLQKLFVNLTNTKEEAAAHVN

Sequences:

>Translated_292_residues
MSIQVQAVQQAFRGQTVLDNLNLTIKPNTIYGLLGRNGAGKSTLLNIISNRIFADSGTVTMDNESMCDNDRTLGKVYLMS
EVNLYSERSRVKQLFKTTALLYGDFNDTYAKKLAQTFGLDLNARFGKLSTGYRTIFKLIIALCVPAEYIFLDEPVLGLDA
NHREIFYQELIETYSDHPRTFVISTHLIEEITNLIEHVFVLDHHHIIVDGDVTDILGQSYAVTGPQTDVSTYTDGLNIIG
KDHLGGITAHYVYGPLDNDRPIPDTVTVEHLDLQKLFVNLTNTKEEAAAHVN
>Mature_291_residues
SIQVQAVQQAFRGQTVLDNLNLTIKPNTIYGLLGRNGAGKSTLLNIISNRIFADSGTVTMDNESMCDNDRTLGKVYLMSE
VNLYSERSRVKQLFKTTALLYGDFNDTYAKKLAQTFGLDLNARFGKLSTGYRTIFKLIIALCVPAEYIFLDEPVLGLDAN
HREIFYQELIETYSDHPRTFVISTHLIEEITNLIEHVFVLDHHHIIVDGDVTDILGQSYAVTGPQTDVSTYTDGLNIIGK
DHLGGITAHYVYGPLDNDRPIPDTVTVEHLDLQKLFVNLTNTKEEAAAHVN

Specific function: Part of the ABC transporter complex YtrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI48995001, Length=216, Percent_Identity=25.462962962963, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788450, Length=228, Percent_Identity=27.6315789473684, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788472, Length=213, Percent_Identity=28.169014084507, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789593, Length=226, Percent_Identity=26.1061946902655, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87081782, Length=225, Percent_Identity=26.2222222222222, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788225, Length=228, Percent_Identity=25, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786319, Length=228, Percent_Identity=26.7543859649123, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789586, Length=247, Percent_Identity=25.5060728744939, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790525, Length=229, Percent_Identity=26.2008733624454, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI48994943, Length=204, Percent_Identity=25.4901960784314, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790190, Length=227, Percent_Identity=23.7885462555066, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1787792, Length=219, Percent_Identity=26.027397260274, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI2367384, Length=205, Percent_Identity=27.8048780487805, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1790739, Length=227, Percent_Identity=24.6696035242291, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI71983510, Length=231, Percent_Identity=23.3766233766234, Blast_Score=64, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=231, Percent_Identity=23.3766233766234, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24650853, Length=202, Percent_Identity=30.6930693069307, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24650855, Length=202, Percent_Identity=30.6930693069307, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI281362751, Length=185, Percent_Identity=31.8918918918919, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI85725262, Length=211, Percent_Identity=29.8578199052133, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI28574150, Length=203, Percent_Identity=30.0492610837438, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI116007328, Length=203, Percent_Identity=30.0492610837438, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 32653; Mature: 32522

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIQVQAVQQAFRGQTVLDNLNLTIKPNTIYGLLGRNGAGKSTLLNIISNRIFADSGTVT
CCEEHHHHHHHHCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHHHEECCCCCEE
MDNESMCDNDRTLGKVYLMSEVNLYSERSRVKQLFKTTALLYGDFNDTYAKKLAQTFGLD
ECCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHCCC
LNARFGKLSTGYRTIFKLIIALCVPAEYIFLDEPVLGLDANHREIFYQELIETYSDHPRT
CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCHHHHHHHHHHHHHCCCCCE
FVISTHLIEEITNLIEHVFVLDHHHIIVDGDVTDILGQSYAVTGPQTDVSTYTDGLNIIG
EEEHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHCCCEEECCCCCCHHHHCCCCCEEE
KDHLGGITAHYVYGPLDNDRPIPDTVTVEHLDLQKLFVNLTNTKEEAAAHVN
CCCCCCEEEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHCCCHHHHHCCCC
>Mature Secondary Structure 
SIQVQAVQQAFRGQTVLDNLNLTIKPNTIYGLLGRNGAGKSTLLNIISNRIFADSGTVT
CEEHHHHHHHHCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHHHEECCCCCEE
MDNESMCDNDRTLGKVYLMSEVNLYSERSRVKQLFKTTALLYGDFNDTYAKKLAQTFGLD
ECCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHCCC
LNARFGKLSTGYRTIFKLIIALCVPAEYIFLDEPVLGLDANHREIFYQELIETYSDHPRT
CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCHHHHHHHHHHHHHCCCCCE
FVISTHLIEEITNLIEHVFVLDHHHIIVDGDVTDILGQSYAVTGPQTDVSTYTDGLNIIG
EEEHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHCCCEEECCCCCCHHHHCCCCCEEE
KDHLGGITAHYVYGPLDNDRPIPDTVTVEHLDLQKLFVNLTNTKEEAAAHVN
CCCCCCEEEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]