Click here to switch to the map view.

The map label for this gene is yhcF [H]

Identifier: 28379234

GI number: 28379234

Start: 2440809

End: 2441180

Strand: Direct

Name: yhcF [H]

Synonym: lp_2742

Alternate gene names: 28379234

Gene position: 2440809-2441180 (Clockwise)

Preceding gene: 28379233

Following gene: 28379235

Centisome position: 73.78

GC content: 43.28

Gene sequence:

>372_bases
ATGCAGTTCAACTTTAATAGCACGGAACCAATCTACTTGCAGGTTGCCGACCAAATTGAAGAAGCTATCTTTACGGAAAC
CTTCGCTGAAGGTGAACAAATTCCTTCGACAACCGAGATTTCTAAAGAATTTCATATTAATCCTGCGACCGTGCTTAAGG
GCATGAATATTCTAGTTGATGCCCAACTGATTGAAAAACGGCGTGGGGTCGGGATGTTTGTCATCGCCGGTGCACAACAA
CGAATCGTTGAAAAGCGCCGGGATCAGTTCTACACCGACTACGTTAAAAAACTAGTCGCTGAAGCACAAAAGCTCCACAT
TACGCAAGATGAATTAGCTAAATTAATTGAACGGGGGTTTTCCGAATCATGA

Upstream 100 bases:

>100_bases
TTGGATTGCTGCCCGGATCGATCGTACCGAACGACAACTGCACCAGCCGCAACAAAAGGCCACAACGAAATAGGGCAATC
ACTGCAATGAGGTGAATAAA

Downstream 100 bases:

>100_bases
GTATTCAAGTTCAGGCTGTCCAGCAGGCCTTTCGCGGTCAAACCGTCCTGGATAATCTTAACCTAACGATCAAACCAAAC
ACGATTTACGGTTTGCTAGG

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MQFNFNSTEPIYLQVADQIEEAIFTETFAEGEQIPSTTEISKEFHINPATVLKGMNILVDAQLIEKRRGVGMFVIAGAQQ
RIVEKRRDQFYTDYVKKLVAEAQKLHITQDELAKLIERGFSES

Sequences:

>Translated_123_residues
MQFNFNSTEPIYLQVADQIEEAIFTETFAEGEQIPSTTEISKEFHINPATVLKGMNILVDAQLIEKRRGVGMFVIAGAQQ
RIVEKRRDQFYTDYVKKLVAEAQKLHITQDELAKLIERGFSES
>Mature_123_residues
MQFNFNSTEPIYLQVADQIEEAIFTETFAEGEQIPSTTEISKEFHINPATVLKGMNILVDAQLIEKRRGVGMFVIAGAQQ
RIVEKRRDQFYTDYVKKLVAEAQKLHITQDELAKLIERGFSES

Specific function: Possible Transcriptional Regulator Of The Succinyl-CoA- Synthetase Operon. Binds Specifically To The Farr Promoter And Exhibits Weak Binding To The Citrate Synthase And Lipoamide Dehydrogenase Promoters. Binding At The Farr Promoter Is Abolished By Long-

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 14081; Mature: 14081

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFNFNSTEPIYLQVADQIEEAIFTETFAEGEQIPSTTEISKEFHINPATVLKGMNILVD
CCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCHHHHH
AQLIEKRRGVGMFVIAGAQQRIVEKRRDQFYTDYVKKLVAEAQKLHITQDELAKLIERGF
HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
SES
CCC
>Mature Secondary Structure
MQFNFNSTEPIYLQVADQIEEAIFTETFAEGEQIPSTTEISKEFHINPATVLKGMNILVD
CCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHCCCHHHHH
AQLIEKRRGVGMFVIAGAQQRIVEKRRDQFYTDYVKKLVAEAQKLHITQDELAKLIERGF
HHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
SES
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]