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The map label for this gene is int [H]

Identifier: 28379038

GI number: 28379038

Start: 2217185

End: 2218342

Strand: Direct

Name: int [H]

Synonym: lp_2480

Alternate gene names: 28379038

Gene position: 2217185-2218342 (Clockwise)

Preceding gene: 28379037

Following gene: 28379039

Centisome position: 67.02

GC content: 39.29

Gene sequence:

>1158_bases
ATGGCAACAATCAAGAAGTATCAGGACAAGGACGGGAATACCCGTTATCAGTTTCAAGTTTATTTAGGCGTTGATCCACT
AACGGGGAAAAAGAAAAATACCCGACGCCGTGGATTCAAGACAAAAAAAGAAGCCCAGATTGTATTATCAAGACTTGAAC
TTGATATTTACAATCATGGGCTACCAACTAAAAACGATAATACAATTTTTAAAGATATTTACCAGCTGTGGTTCACACAA
TATAAACAAACGGTTAAGGAAAGTACTTGGGTAACGACTCAACGGCTGTTTCGGCTTCATATTTTACCAATATTTAGTGA
TTACCGGATTGCTAAAATATCCATTAAGGATTGTCAAAAAGCCATTAATCAGTGGTTTAATGCTGGCTTGGCCAAGTATC
ATACTCTAATGAATTACGTTGCCAAGGTGCTTGATTATGCCATCAACATTGACTTGATCAGTGAGAATCCAGCCAAGCGC
GTTATTGTGCCAGTAAATAAAAATGATCGTTCACGCAAAAATTTAGAAAATTACTTTGATAAGGCTGAATTACAACACTT
CTTTGAGTGCCTGACTGATGATGACAATACACCGCAAGCCAGTGTATTCTTTCGTTTAGCGGCCTTTACTGGTATGAGAA
AATCTGAAATGCTTTGCTTAGAATGGTCTGACATTGATTTTAGCAACCACACTATACGGGTTAATAAAACACAATCCCGT
GGTGATGGTGCCCGTCTGCTAGTACAAGCGCCTAAGACAGCGCGTAGCAATCGGACAGTGTATTTAGATCCCACTACGAT
CAAAATATTGCAACACTGGCAAGTTGACCAAAAAAAATGGCTACTACGTTTCGGCTTTAACATCAACCAAGGTAACCACT
ATGTGTTTGCTAATGAAAATAACGAGATGTTTCAACCATCTAAGCCACGTAAATGGCTTGAGCATACTCTAACTAAATAT
GACTTGAAGCATGTTACGGTTCACGCATTCCGCCACACTTATGCGACGCTTGCATTTGAAGCCCATGCTTCCATCAAGTC
AGTACAAGACCAGTTAGGGCATTCAAGCTATCGCACAACTTTAGATATTTACACCGCAGTTACTGCCAAGCAAAAAAATG
AGGCCACCGAAAAACTGGCTAATTACCTTAATTTTTAA

Upstream 100 bases:

>100_bases
TTTAAAGATTTTTTTAATCGTTTGAAAGAATTTAGCTATAAAAAATAATTTTCCATACATAACACTGCCCCCGCACGGTA
CGTTATGGAGGAAATTATAA

Downstream 100 bases:

>100_bases
TATTTAGACCGCTAAATTTGACGCATTTTACCAAGTGGACCACGTTGGACCACCATATGGACCACGTCAGGGGGCCTTCA
AAGCGTTGATATATCAACGT

Product: prophage Lp3 protein 1, integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 384

Protein sequence:

>385_residues
MATIKKYQDKDGNTRYQFQVYLGVDPLTGKKKNTRRRGFKTKKEAQIVLSRLELDIYNHGLPTKNDNTIFKDIYQLWFTQ
YKQTVKESTWVTTQRLFRLHILPIFSDYRIAKISIKDCQKAINQWFNAGLAKYHTLMNYVAKVLDYAINIDLISENPAKR
VIVPVNKNDRSRKNLENYFDKAELQHFFECLTDDDNTPQASVFFRLAAFTGMRKSEMLCLEWSDIDFSNHTIRVNKTQSR
GDGARLLVQAPKTARSNRTVYLDPTTIKILQHWQVDQKKWLLRFGFNINQGNHYVFANENNEMFQPSKPRKWLEHTLTKY
DLKHVTVHAFRHTYATLAFEAHASIKSVQDQLGHSSYRTTLDIYTAVTAKQKNEATEKLANYLNF

Sequences:

>Translated_385_residues
MATIKKYQDKDGNTRYQFQVYLGVDPLTGKKKNTRRRGFKTKKEAQIVLSRLELDIYNHGLPTKNDNTIFKDIYQLWFTQ
YKQTVKESTWVTTQRLFRLHILPIFSDYRIAKISIKDCQKAINQWFNAGLAKYHTLMNYVAKVLDYAINIDLISENPAKR
VIVPVNKNDRSRKNLENYFDKAELQHFFECLTDDDNTPQASVFFRLAAFTGMRKSEMLCLEWSDIDFSNHTIRVNKTQSR
GDGARLLVQAPKTARSNRTVYLDPTTIKILQHWQVDQKKWLLRFGFNINQGNHYVFANENNEMFQPSKPRKWLEHTLTKY
DLKHVTVHAFRHTYATLAFEAHASIKSVQDQLGHSSYRTTLDIYTAVTAKQKNEATEKLANYLNF
>Mature_384_residues
ATIKKYQDKDGNTRYQFQVYLGVDPLTGKKKNTRRRGFKTKKEAQIVLSRLELDIYNHGLPTKNDNTIFKDIYQLWFTQY
KQTVKESTWVTTQRLFRLHILPIFSDYRIAKISIKDCQKAINQWFNAGLAKYHTLMNYVAKVLDYAINIDLISENPAKRV
IVPVNKNDRSRKNLENYFDKAELQHFFECLTDDDNTPQASVFFRLAAFTGMRKSEMLCLEWSDIDFSNHTIRVNKTQSRG
DGARLLVQAPKTARSNRTVYLDPTTIKILQHWQVDQKKWLLRFGFNINQGNHYVFANENNEMFQPSKPRKWLEHTLTKYD
LKHVTVHAFRHTYATLAFEAHASIKSVQDQLGHSSYRTTLDIYTAVTAKQKNEATEKLANYLNF

Specific function: Putative integrase that is involved in the insertion of the integrative and conjugative element ICEBs1. Required for the excision of ICEBs1 from the donor cell genome and subsequent integration in the recipient cell genome. Appears not to be transferred t

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45171; Mature: 45040

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATIKKYQDKDGNTRYQFQVYLGVDPLTGKKKNTRRRGFKTKKEAQIVLSRLELDIYNHG
CCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCC
LPTKNDNTIFKDIYQLWFTQYKQTVKESTWVTTQRLFRLHILPIFSDYRIAKISIKDCQK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEHHHHHH
AINQWFNAGLAKYHTLMNYVAKVLDYAINIDLISENPAKRVIVPVNKNDRSRKNLENYFD
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHH
KAELQHFFECLTDDDNTPQASVFFRLAAFTGMRKSEMLCLEWSDIDFSNHTIRVNKTQSR
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEECCCCC
GDGARLLVQAPKTARSNRTVYLDPTTIKILQHWQVDQKKWLLRFGFNINQGNHYVFANEN
CCCCEEEEECCCCCCCCCEEEECCHHEEHHHHCCCCHHHHHEEECCEECCCCEEEEECCC
NEMFQPSKPRKWLEHTLTKYDLKHVTVHAFRHTYATLAFEAHASIKSVQDQLGHSSYRTT
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHCCCHHCEE
LDIYTAVTAKQKNEATEKLANYLNF
EEEEEEHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ATIKKYQDKDGNTRYQFQVYLGVDPLTGKKKNTRRRGFKTKKEAQIVLSRLELDIYNHG
CCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCC
LPTKNDNTIFKDIYQLWFTQYKQTVKESTWVTTQRLFRLHILPIFSDYRIAKISIKDCQK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEHHHHHH
AINQWFNAGLAKYHTLMNYVAKVLDYAINIDLISENPAKRVIVPVNKNDRSRKNLENYFD
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHH
KAELQHFFECLTDDDNTPQASVFFRLAAFTGMRKSEMLCLEWSDIDFSNHTIRVNKTQSR
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEECCCCC
GDGARLLVQAPKTARSNRTVYLDPTTIKILQHWQVDQKKWLLRFGFNINQGNHYVFANEN
CCCCEEEEECCCCCCCCCEEEECCHHEEHHHHCCCCHHHHHEEECCEECCCCEEEEECCC
NEMFQPSKPRKWLEHTLTKYDLKHVTVHAFRHTYATLAFEAHASIKSVQDQLGHSSYRTT
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHCCCHHCEE
LDIYTAVTAKQKNEATEKLANYLNF
EEEEEEHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]