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The map label for this gene is 28378379

Identifier: 28378379

GI number: 28378379

Start: 1539151

End: 1540020

Strand: Direct

Name: 28378379

Synonym: lp_1690

Alternate gene names: NA

Gene position: 1539151-1540020 (Clockwise)

Preceding gene: 28378378

Following gene: 28378381

Centisome position: 46.52

GC content: 45.75

Gene sequence:

>870_bases
TTGATGAAAGAAAAACAAGTGTTTCATATCAATGGCTATATTGGTCTAGTGTTAGCGATCGCATTTGTGTTAGTTGGCGG
TTGGCTGGTTTGGGCCGGTGCGACTGGCGATCATTTTGCGAGTATCTTTTTGGGCGCATTGCTAATTATTATTGCGGCCT
TTGGGGCTAGTTCGCTAACAATTGTGGGCCCCAACGAGGCGCGCGTGTTAACATTTTTTGGTAAGTATATCGGGACAATT
CGTGATTCAGGGCTGTTTATGACCGTTCCGTTAACCAGTAAGTTTTCCATTTCACTGCGGGTCCGCAACTTTAACAGTGC
CATTTTAAAAGTTAATGACCTCCGGGGAAATCCCGTGGAAATTGCGGCCGTTATCGTGTTTAAAGTTGTTGATACCAGTA
TGGCACTCTTTGCAGTGGATGATTATGAACAATTTGTTGAGATTCAAAGTGAATCAGCGGTGCGGCACGTGGCCTCTGAA
TATCCATATGATACGTTTGATGACGACAAGAAGATTACGCTGCGGAGTAATCCAACCGAAGTTTCTGACCGGTTAACGGA
AGAACTTCAAGAACGGCTAAATGTTGCGGGGGTCGAGATCGTTGAGACACGCTTAACGCATCTCGCATACGCGACTGAAA
TCGCCAGTGCGATGTTACAACGCCAACAATCTTCGGCAATTCTATCTGCTCGCAAGGTCATCGTGGAAGGGGCCGTTTCA
ATTACGGAAGACACGATCGCCCGTTTAGAGAAAGATACGGGGATGCAGCTATCAGACGATAAGAAACTGCAACTGATCAA
TAACATGATGGTCACCATTATTTCGGAACGGGGTACTCAGCCAATTGTGAATACTTCGGAAGTTAAGTAG

Upstream 100 bases:

>100_bases
CGAAGGTGATTGCCACCACTGACTTTGGAACTTGCCATCGAACTTAGATTTGCGAGCATGTGAGGCGCTTATGCTATAAT
AAGGGCCAAAGGGGGTAGTC

Downstream 100 bases:

>100_bases
GAACGTTGATATAACAAGATTTATAACTGCATTTTTTAAACGCATCACCACTATAAAAGTTGGTAATGCGTTTTTGTGGT
GAAGTCGGTGGTGAAGAAAT

Product: integral membrane protein

Products: NA

Alternate protein names: Integral Membrane Protein; SPFH Domain/Band 7 Family Protein; SPFH Domain-Containing Protein/Band 7 Family Protein; Band 7 Family Protein; Somatin-Like Protein; SPFH Domain / Band 7 Family Protein; SPFH Domain-Containing Protein; Integral Membrane Protease Subunit; SPFH/Band 7 Domain-Containing Protein; Membrane Protease Family Stomatin/Prohibitin-Like Protein; Membrane Protease Subunits Stomatin/Prohibitin Homologs; Band 7 Family Membrane Protein; Transmembrane Protein; Membrane Protease Subunit Stomatin/Prohibitin; HFLK Protein

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MMKEKQVFHINGYIGLVLAIAFVLVGGWLVWAGATGDHFASIFLGALLIIIAAFGASSLTIVGPNEARVLTFFGKYIGTI
RDSGLFMTVPLTSKFSISLRVRNFNSAILKVNDLRGNPVEIAAVIVFKVVDTSMALFAVDDYEQFVEIQSESAVRHVASE
YPYDTFDDDKKITLRSNPTEVSDRLTEELQERLNVAGVEIVETRLTHLAYATEIASAMLQRQQSSAILSARKVIVEGAVS
ITEDTIARLEKDTGMQLSDDKKLQLINNMMVTIISERGTQPIVNTSEVK

Sequences:

>Translated_289_residues
MMKEKQVFHINGYIGLVLAIAFVLVGGWLVWAGATGDHFASIFLGALLIIIAAFGASSLTIVGPNEARVLTFFGKYIGTI
RDSGLFMTVPLTSKFSISLRVRNFNSAILKVNDLRGNPVEIAAVIVFKVVDTSMALFAVDDYEQFVEIQSESAVRHVASE
YPYDTFDDDKKITLRSNPTEVSDRLTEELQERLNVAGVEIVETRLTHLAYATEIASAMLQRQQSSAILSARKVIVEGAVS
ITEDTIARLEKDTGMQLSDDKKLQLINNMMVTIISERGTQPIVNTSEVK
>Mature_289_residues
MMKEKQVFHINGYIGLVLAIAFVLVGGWLVWAGATGDHFASIFLGALLIIIAAFGASSLTIVGPNEARVLTFFGKYIGTI
RDSGLFMTVPLTSKFSISLRVRNFNSAILKVNDLRGNPVEIAAVIVFKVVDTSMALFAVDDYEQFVEIQSESAVRHVASE
YPYDTFDDDKKITLRSNPTEVSDRLTEELQERLNVAGVEIVETRLTHLAYATEIASAMLQRQQSSAILSARKVIVEGAVS
ITEDTIARLEKDTGMQLSDDKKLQLINNMMVTIISERGTQPIVNTSEVK

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31808; Mature: 31808

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKEKQVFHINGYIGLVLAIAFVLVGGWLVWAGATGDHFASIFLGALLIIIAAFGASSLT
CCCCCEEEEECCHHHHHHHHHHHHHCCHHEEECCCCHHHHHHHHHHHHHHHHHCCCCEEE
IVGPNEARVLTFFGKYIGTIRDSGLFMTVPLTSKFSISLRVRNFNSAILKVNDLRGNPVE
EECCCCCEEHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEEEECCCEEEEEECCCCCCHH
IAAVIVFKVVDTSMALFAVDDYEQFVEIQSESAVRHVASEYPYDTFDDDKKITLRSNPTE
HHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCH
VSDRLTEELQERLNVAGVEIVETRLTHLAYATEIASAMLQRQQSSAILSARKVIVEGAVS
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
ITEDTIARLEKDTGMQLSDDKKLQLINNMMVTIISERGTQPIVNTSEVK
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MMKEKQVFHINGYIGLVLAIAFVLVGGWLVWAGATGDHFASIFLGALLIIIAAFGASSLT
CCCCCEEEEECCHHHHHHHHHHHHHCCHHEEECCCCHHHHHHHHHHHHHHHHHCCCCEEE
IVGPNEARVLTFFGKYIGTIRDSGLFMTVPLTSKFSISLRVRNFNSAILKVNDLRGNPVE
EECCCCCEEHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEEEECCCEEEEEECCCCCCHH
IAAVIVFKVVDTSMALFAVDDYEQFVEIQSESAVRHVASEYPYDTFDDDKKITLRSNPTE
HHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCH
VSDRLTEELQERLNVAGVEIVETRLTHLAYATEIASAMLQRQQSSAILSARKVIVEGAVS
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
ITEDTIARLEKDTGMQLSDDKKLQLINNMMVTIISERGTQPIVNTSEVK
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA