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The map label for this gene is 28378335

Identifier: 28378335

GI number: 28378335

Start: 1492729

End: 1492986

Strand: Direct

Name: 28378335

Synonym: lp_1637

Alternate gene names: NA

Gene position: 1492729-1492986 (Clockwise)

Preceding gene: 28378334

Following gene: 28378336

Centisome position: 45.12

GC content: 44.19

Gene sequence:

>258_bases
ATGGCAGATATTAAAGCTTTAATCACCACGGTTGTCACCCCGTTAGTTCAATATCCAGACGATATTAAAGTTGATTTTAA
GGAAACCACGCGTTATCTTGAATACAACTTAACGGTTAATCCCGAAGATATCGGCCGGGTCATTGGTCGGCAGGGACGGG
TTGCTTCGGCAATTCGGACAATTGTGTATAGTGTCCGAGTTTCAGGACCTAAACGTGTCCGGCTTACGATCGAAGACGGA
CAACAAAAAAACTCTTGA

Upstream 100 bases:

>100_bases
CCCAACCTTCAGATACGGTTAAGAATATCTTATCTAAGGCCGGTATCATGAAGAAGTACCACGAAGCTAAGTTCACTAAA
TAATAAAGCGGTAATAGATC

Downstream 100 bases:

>100_bases
GCGAAGCAGTGATGTTTTGTTTAAGAGTTTTTTTATATCTTGTTCCGGTTTTTGAGGACGAGTCAAAGTATCTCGATGAC
CGTCGTTGAGTAGATTAGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 85; Mature: 84

Protein sequence:

>85_residues
MADIKALITTVVTPLVQYPDDIKVDFKETTRYLEYNLTVNPEDIGRVIGRQGRVASAIRTIVYSVRVSGPKRVRLTIEDG
QQKNS

Sequences:

>Translated_85_residues
MADIKALITTVVTPLVQYPDDIKVDFKETTRYLEYNLTVNPEDIGRVIGRQGRVASAIRTIVYSVRVSGPKRVRLTIEDG
QQKNS
>Mature_84_residues
ADIKALITTVVTPLVQYPDDIKVDFKETTRYLEYNLTVNPEDIGRVIGRQGRVASAIRTIVYSVRVSGPKRVRLTIEDGQ
QKNS

Specific function: Unknown

COG id: COG1837

COG function: function code R; Predicted RNA-binding protein (contains KH domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 KH domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009019
- InterPro:   IPR018111
- InterPro:   IPR020627 [H]

Pfam domain/function: PF00013 KH_1 [H]

EC number: NA

Molecular weight: Translated: 9578; Mature: 9447

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADIKALITTVVTPLVQYPDDIKVDFKETTRYLEYNLTVNPEDIGRVIGRQGRVASAIRT
CCHHHHHHHHHHHHHHCCCCCCEEEHHHCCEEEEEEEEECHHHHHHHHCCCCCHHHHHHH
IVYSVRVSGPKRVRLTIEDGQQKNS
HHHHEEECCCEEEEEEEECCCCCCC
>Mature Secondary Structure 
ADIKALITTVVTPLVQYPDDIKVDFKETTRYLEYNLTVNPEDIGRVIGRQGRVASAIRT
CHHHHHHHHHHHHHHCCCCCCEEEHHHCCEEEEEEEEECHHHHHHHHCCCCCHHHHHHH
IVYSVRVSGPKRVRLTIEDGQQKNS
HHHHEEECCCEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]