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The map label for this gene is rimM

Identifier: 28378336

GI number: 28378336

Start: 1493147

End: 1493671

Strand: Direct

Name: rimM

Synonym: lp_1638

Alternate gene names: 28378336

Gene position: 1493147-1493671 (Clockwise)

Preceding gene: 28378335

Following gene: 28378337

Centisome position: 45.13

GC content: 46.86

Gene sequence:

>525_bases
ATGGATTACTATCGTGTTGGCACCCTAGTTAACACCCACGGCATTCGTGGTGAAGTGAAAGTCGTTGTCGTGACTGATTT
TCCAGAAGAACGCTTTAAAGTAGGGCAACAATTGAGTTTATTTAAAACCCCAGATGAAACGACTGGCGGGATTACTGTCA
AAATCGCGAAGGCCCGTGAGCAAAAGGGGCTGTACTTTCTTACCTTTGAAGGGCTCGATAACATCAATGATGTGGAGCGC
TATAAGGGGTGGACGATCAAAGTTCCTGCTGAAGCATTACATGCCTTGCCAGCGGGTGAGTACTACTATCACCAGATTGT
CGGCCTACAAGTTGTGACGACCGCTGACGAGCCTTTAGGGACTATTAAAGAGATTCTGTCACCTGGTGCGAATGATGTTT
GGGTGGTCAAACGGGATCATGGTCAGTCTGACGTCTTACTACCTAAGATTCCCCAGGTCATTAAAGATGTTGACTTGGAT
GCGGGCGTGGTGACTGTTGAACTAATGGAAGGGCTGATTGATTAA

Upstream 100 bases:

>100_bases
AGTCAAAGTATCTCGATGACCGTCGTTGAGTAGATTAGTTGTAACATGTTGATGACATTTAAAACGAATAACAATCAAGC
TAATTAAGAGGAGGAAGCTA

Downstream 100 bases:

>100_bases
TGCAAATCGATATTTTAAGCCTGTTTCCAGAGATGTTTGCGGGGCCGCTTCATGAGTCGATGATTGGCAATGCCATTGAA
AATGACGTCATCAATGTTGA

Product: 16S rRNA processing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MDYYRVGTLVNTHGIRGEVKVVVVTDFPEERFKVGQQLSLFKTPDETTGGITVKIAKAREQKGLYFLTFEGLDNINDVER
YKGWTIKVPAEALHALPAGEYYYHQIVGLQVVTTADEPLGTIKEILSPGANDVWVVKRDHGQSDVLLPKIPQVIKDVDLD
AGVVTVELMEGLID

Sequences:

>Translated_174_residues
MDYYRVGTLVNTHGIRGEVKVVVVTDFPEERFKVGQQLSLFKTPDETTGGITVKIAKAREQKGLYFLTFEGLDNINDVER
YKGWTIKVPAEALHALPAGEYYYHQIVGLQVVTTADEPLGTIKEILSPGANDVWVVKRDHGQSDVLLPKIPQVIKDVDLD
AGVVTVELMEGLID
>Mature_174_residues
MDYYRVGTLVNTHGIRGEVKVVVVTDFPEERFKVGQQLSLFKTPDETTGGITVKIAKAREQKGLYFLTFEGLDNINDVER
YKGWTIKVPAEALHALPAGEYYYHQIVGLQVVTTADEPLGTIKEILSPGANDVWVVKRDHGQSDVLLPKIPQVIKDVDLD
AGVVTVELMEGLID

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_LACPL (Q88WJ3)

Other databases:

- EMBL:   AL935256
- RefSeq:   NP_785228.1
- ProteinModelPortal:   Q88WJ3
- SMR:   Q88WJ3
- GeneID:   1062156
- GenomeReviews:   AL935263_GR
- KEGG:   lpl:lp_1638
- NMPDR:   fig|220668.1.peg.1362
- HOGENOM:   HBG703775
- OMA:   NDVYWIK
- ProtClustDB:   CLSK2520238
- BioCyc:   LPLA220668:LP_1638-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19323; Mature: 19323

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYYRVGTLVNTHGIRGEVKVVVVTDFPEERFKVGQQLSLFKTPDETTGGITVKIAKARE
CCEEEEEEEEECCCCCCEEEEEEEECCCHHHHHCCCEEEEEECCCCCCCCEEEEEEECCC
QKGLYFLTFEGLDNINDVERYKGWTIKVPAEALHALPAGEYYYHQIVGLQVVTTADEPLG
CCCEEEEEECCCCCCCHHHHHCCCEEEECHHHHHHCCCCCCEEEEEEEEEEEEECCCCHH
TIKEILSPGANDVWVVKRDHGQSDVLLPKIPQVIKDVDLDAGVVTVELMEGLID
HHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHCC
>Mature Secondary Structure
MDYYRVGTLVNTHGIRGEVKVVVVTDFPEERFKVGQQLSLFKTPDETTGGITVKIAKARE
CCEEEEEEEEECCCCCCEEEEEEEECCCHHHHHCCCEEEEEECCCCCCCCEEEEEEECCC
QKGLYFLTFEGLDNINDVERYKGWTIKVPAEALHALPAGEYYYHQIVGLQVVTTADEPLG
CCCEEEEEECCCCCCCHHHHHCCCEEEECHHHHHHCCCCCCEEEEEEEEEEEEECCCCHH
TIKEILSPGANDVWVVKRDHGQSDVLLPKIPQVIKDVDLDAGVVTVELMEGLID
HHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12566566