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The map label for this gene is yqxC [H]

Identifier: 28378304

GI number: 28378304

Start: 1457902

End: 1458720

Strand: Direct

Name: yqxC [H]

Synonym: lp_1603

Alternate gene names: 28378304

Gene position: 1457902-1458720 (Clockwise)

Preceding gene: 28378303

Following gene: 28378305

Centisome position: 44.07

GC content: 44.57

Gene sequence:

>819_bases
ATGGAAAAAGAACGAGTTGACGTATTATTAGTACAACAAGGATTATTTGATACCCGCGAAAAGGCTAAGCGTGCCGTAAT
GGCCGGTGAAATCTTAGGTGTCAACGAAGAACGCTTAGATAAGCCGGGCATGAAGATACCAGTGGCAACTGAATTACATT
TGAAAGGCAAACCGATGCCCTACGTTTCACGTGGCGGTCTCAAACTTGAAAAAGCACTCAAAAGTTTTGAAATTGACGTG
ACCGACAAAACGGTCCTAGATATTGGCTCGTCGACTGGTGGTTTTACCGACGTGGTTTTACAAAATGGGGCAAAAATGAG
TTACGCCTTGGATGTCGGTAGTAATCAGTTGGTCTGGAAGTTACGCCAAGATCCGCGCGTGGTTGTGATGGAACATACTA
ACTTTCGGTATAGTAAACTGGCAGATTTCACGCAGGGGCAACCTAACTTCGCGTCCATCGACGTTTCATTTATTTCACTA
CACTTAATTTTGCCCCCATTACACGCGATTATTGAAAACGGTGGTTCAGTCGTTGCCCTAATCAAGCCACAATTTGAGGC
TGGCCGTGAGAATGTCGGCAAACACGGAATTGTCCGTGATCCTGCTGTTCATCAGGCGGTGTTGACAGATATCGTGGAAT
TTGCGCAAGCGAATGGTTATAACGTTCTAGGGCTTGATTATTCACCAATCAAGGGTGGTGAAGGTAATATTGAGTTTCTA
ATTCATTTACAAGCTACCGATGAAACACCACGGATTGCGCCGACTGTGTCGATTGAAAAAACTCAGGCGGCCGCTTATGA
ACAATTAAATCAAGCTTAA

Upstream 100 bases:

>100_bases
CTCAAACGGCGTTAGTAAAAGCTAGTGCTGCTAGTCAACGAGGCATGGGCTTGCTTGCAGCTTTTCTAACGTATTTTACA
GATTAAGGACTTAAATTTAG

Downstream 100 bases:

>100_bases
AATTGAAATCCGGACTTTCATATTTATGCATTTTGGCTTATGATGTGTTTAAATAAGTATGAATAGCTACCGGGGGTGAT
CGGGTGAAGAAGCAAGAGCG

Product: hemolysin-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MEKERVDVLLVQQGLFDTREKAKRAVMAGEILGVNEERLDKPGMKIPVATELHLKGKPMPYVSRGGLKLEKALKSFEIDV
TDKTVLDIGSSTGGFTDVVLQNGAKMSYALDVGSNQLVWKLRQDPRVVVMEHTNFRYSKLADFTQGQPNFASIDVSFISL
HLILPPLHAIIENGGSVVALIKPQFEAGRENVGKHGIVRDPAVHQAVLTDIVEFAQANGYNVLGLDYSPIKGGEGNIEFL
IHLQATDETPRIAPTVSIEKTQAAAYEQLNQA

Sequences:

>Translated_272_residues
MEKERVDVLLVQQGLFDTREKAKRAVMAGEILGVNEERLDKPGMKIPVATELHLKGKPMPYVSRGGLKLEKALKSFEIDV
TDKTVLDIGSSTGGFTDVVLQNGAKMSYALDVGSNQLVWKLRQDPRVVVMEHTNFRYSKLADFTQGQPNFASIDVSFISL
HLILPPLHAIIENGGSVVALIKPQFEAGRENVGKHGIVRDPAVHQAVLTDIVEFAQANGYNVLGLDYSPIKGGEGNIEFL
IHLQATDETPRIAPTVSIEKTQAAAYEQLNQA
>Mature_272_residues
MEKERVDVLLVQQGLFDTREKAKRAVMAGEILGVNEERLDKPGMKIPVATELHLKGKPMPYVSRGGLKLEKALKSFEIDV
TDKTVLDIGSSTGGFTDVVLQNGAKMSYALDVGSNQLVWKLRQDPRVVVMEHTNFRYSKLADFTQGQPNFASIDVSFISL
HLILPPLHAIIENGGSVVALIKPQFEAGRENVGKHGIVRDPAVHQAVLTDIVEFAQANGYNVLGLDYSPIKGGEGNIEFL
IHLQATDETPRIAPTVSIEKTQAAAYEQLNQA

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29798; Mature: 29798

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKERVDVLLVQQGLFDTREKAKRAVMAGEILGVNEERLDKPGMKIPVATELHLKGKPMP
CCCCCEEEEEEECCCCHHHHHHHHHHHHHHEECCCHHHHCCCCCCCCEEEEEEECCCCCC
YVSRGGLKLEKALKSFEIDVTDKTVLDIGSSTGGFTDVVLQNGAKMSYALDVGSNQLVWK
CCCCCCCHHHHHHHHEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEE
LRQDPRVVVMEHTNFRYSKLADFTQGQPNFASIDVSFISLHLILPPLHAIIENGGSVVAL
ECCCCEEEEEECCCCCHHHHHHHCCCCCCEEEEEEEEEEEEHHHHHHHHHHHCCCCEEEE
IKPQFEAGRENVGKHGIVRDPAVHQAVLTDIVEFAQANGYNVLGLDYSPIKGGEGNIEFL
ECCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEE
IHLQATDETPRIAPTVSIEKTQAAAYEQLNQA
EEEEECCCCCCCCEEEEECHHHHHHHHHHHCC
>Mature Secondary Structure
MEKERVDVLLVQQGLFDTREKAKRAVMAGEILGVNEERLDKPGMKIPVATELHLKGKPMP
CCCCCEEEEEEECCCCHHHHHHHHHHHHHHEECCCHHHHCCCCCCCCEEEEEEECCCCCC
YVSRGGLKLEKALKSFEIDVTDKTVLDIGSSTGGFTDVVLQNGAKMSYALDVGSNQLVWK
CCCCCCCHHHHHHHHEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEEECCCCEEEEE
LRQDPRVVVMEHTNFRYSKLADFTQGQPNFASIDVSFISLHLILPPLHAIIENGGSVVAL
ECCCCEEEEEECCCCCHHHHHHHCCCCCCEEEEEEEEEEEEHHHHHHHHHHHCCCCEEEE
IKPQFEAGRENVGKHGIVRDPAVHQAVLTDIVEFAQANGYNVLGLDYSPIKGGEGNIEFL
ECCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEE
IHLQATDETPRIAPTVSIEKTQAAAYEQLNQA
EEEEECCCCCCCCEEEEECHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]