Click here to switch to the map view.

The map label for this gene is ecsB [H]

Identifier: 28378175

GI number: 28378175

Start: 1332242

End: 1333447

Strand: Direct

Name: ecsB [H]

Synonym: lp_1456

Alternate gene names: 28378175

Gene position: 1332242-1333447 (Clockwise)

Preceding gene: 28378174

Following gene: 28378176

Centisome position: 40.27

GC content: 47.84

Gene sequence:

>1206_bases
ATGAATGAGTTATTTCAAACGCGGTTGCAGCAGCATCTGCGTCGGATGTTGCGCTACCTAAGATTGGTGTTCAATGATCA
CTTTGTCATTGCATTAATGTTTTTTGTCGGCGGACTCGGGCTGGCTTATTCCAATTGGCTCAAGACGCTTGGCCCTCAGC
AGACGTGGATCGTCTGGGTGCTCGGTCTCTTATTATGGGCGGGCCTAAGTGTCAGTCATATCGCAACGTTATTAGAACCG
GCCGATACCGTTTTCCTGTTACCACGTGAACGGGATGTGCATGCGTACTTCGTGAAAGCGTGGCGCTACAGTTGGTGGTT
GGCGCAAGCAGTCCAAGTGATTTTTGTTGGCTTGACCGTGCCGTTGCTCATGATCGTTGATCAGATGACGGGCTGGTCGT
TGCTGGCGTTACTCATCACCCAGTTGGCGTTAAAGGATGCCCAGTTAACGCTGAGCGTGACGCATCTCTATCAAGTGAAG
CCAAGCATGAAGCGGTGGTTGCGCCCCCTGAACTGGGCCGGTGCGTTCGTCACGTTGGCAGTGGGACTATTAGTGACGCC
GTGGTTGAGTGCCGCAATGGCCATCGCGATTGCGGTGGGACAACGTTATTTGCACCAACGAATTTGGTCGACCACGGTGA
TTGCTTGGCGTGACGACATCAAAGCCGAAGCCAACCGTATGTTAGGGATTTATCGATTCTTTAATTTATTTACGGATGTA
CCAATGGTGCAAGGCAGTGTCAAACGTCGTCGGTACCTGGATTGGTTACTACGGTGGTTACCTAAGGATCAGCAGCATGC
GTTTGGCTACCTATATACACGTGGCATGTTGCGCGGCACGGAATTTAGCGGGTTAGTGGTTCGTTTGACAGTTATTGGTG
CGGTGCTACTGTACTTTAGTGGGCACGGTTGGTTAGCGATGGCGTTGGACGCCTTATTTATTTACTTGATTGGGTTTCAA
TTGTTGCCGTTTTACAAGCAATACGATAATATAGTTTTTACGCACATTTATCCGCTGGCAACTAAACAGCGGGTGAAAAA
CTTTCAGCGGTTATTGCGAAACGTGTTAAGTTTGACGGGATTAATCTTTTTAGTTGCGTTCTGGTTAAGCAACGCACCGT
TAGCTCAAGTTGGGATTTTGCTCATCATTAACGTGATTGAAATCTATCTCTTAGTTACTTGGTATTTAAAATTAAGATTA
GCTTAA

Upstream 100 bases:

>100_bases
GTACAGACACAGGGGACTTTTGCTGAAATCAAAGCGAATTATCCGGATGCGGGTGAGTCATTAAACGATATTTATCTTTC
ATTGACCGGGGTGACCCGTG

Downstream 100 bases:

>100_bases
AACCTTGATGTATCAAGGGTTAAAAAGGACTTGACGGATTCAGCTTTCGTCTATAAAATGTGATTGTTAAGTCAAATAAT
AATGAGTCATTAAATAAATT

Product: ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MNELFQTRLQQHLRRMLRYLRLVFNDHFVIALMFFVGGLGLAYSNWLKTLGPQQTWIVWVLGLLLWAGLSVSHIATLLEP
ADTVFLLPRERDVHAYFVKAWRYSWWLAQAVQVIFVGLTVPLLMIVDQMTGWSLLALLITQLALKDAQLTLSVTHLYQVK
PSMKRWLRPLNWAGAFVTLAVGLLVTPWLSAAMAIAIAVGQRYLHQRIWSTTVIAWRDDIKAEANRMLGIYRFFNLFTDV
PMVQGSVKRRRYLDWLLRWLPKDQQHAFGYLYTRGMLRGTEFSGLVVRLTVIGAVLLYFSGHGWLAMALDALFIYLIGFQ
LLPFYKQYDNIVFTHIYPLATKQRVKNFQRLLRNVLSLTGLIFLVAFWLSNAPLAQVGILLIINVIEIYLLVTWYLKLRL
A

Sequences:

>Translated_401_residues
MNELFQTRLQQHLRRMLRYLRLVFNDHFVIALMFFVGGLGLAYSNWLKTLGPQQTWIVWVLGLLLWAGLSVSHIATLLEP
ADTVFLLPRERDVHAYFVKAWRYSWWLAQAVQVIFVGLTVPLLMIVDQMTGWSLLALLITQLALKDAQLTLSVTHLYQVK
PSMKRWLRPLNWAGAFVTLAVGLLVTPWLSAAMAIAIAVGQRYLHQRIWSTTVIAWRDDIKAEANRMLGIYRFFNLFTDV
PMVQGSVKRRRYLDWLLRWLPKDQQHAFGYLYTRGMLRGTEFSGLVVRLTVIGAVLLYFSGHGWLAMALDALFIYLIGFQ
LLPFYKQYDNIVFTHIYPLATKQRVKNFQRLLRNVLSLTGLIFLVAFWLSNAPLAQVGILLIINVIEIYLLVTWYLKLRL
A
>Mature_401_residues
MNELFQTRLQQHLRRMLRYLRLVFNDHFVIALMFFVGGLGLAYSNWLKTLGPQQTWIVWVLGLLLWAGLSVSHIATLLEP
ADTVFLLPRERDVHAYFVKAWRYSWWLAQAVQVIFVGLTVPLLMIVDQMTGWSLLALLITQLALKDAQLTLSVTHLYQVK
PSMKRWLRPLNWAGAFVTLAVGLLVTPWLSAAMAIAIAVGQRYLHQRIWSTTVIAWRDDIKAEANRMLGIYRFFNLFTDV
PMVQGSVKRRRYLDWLLRWLPKDQQHAFGYLYTRGMLRGTEFSGLVVRLTVIGAVLLYFSGHGWLAMALDALFIYLIGFQ
LLPFYKQYDNIVFTHIYPLATKQRVKNFQRLLRNVLSLTGLIFLVAFWLSNAPLAQVGILLIINVIEIYLLVTWYLKLRL
A

Specific function: Presumed to form part of an ABC-transporter, it may form a transport channel [H]

COG id: COG4473

COG function: function code U; Predicted ABC-type exoprotein transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010288 [H]

Pfam domain/function: PF05975 EcsB [H]

EC number: NA

Molecular weight: Translated: 46473; Mature: 46473

Theoretical pI: Translated: 10.68; Mature: 10.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8581172; 9579061; 9384377 [H]