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The map label for this gene is ugpB [H]

Identifier: 28378075

GI number: 28378075

Start: 1221807

End: 1223159

Strand: Direct

Name: ugpB [H]

Synonym: lp_1327

Alternate gene names: 28378075

Gene position: 1221807-1223159 (Clockwise)

Preceding gene: 28378074

Following gene: 28378076

Centisome position: 36.93

GC content: 48.41

Gene sequence:

>1353_bases
ATGATGAAGATAACGCGAAAGTGGCAGTGGCTAGCCGGTATGATGGTTGTCCTCTTGGTAGTGGGTGGGGTCGCTTATAG
TCGGACCCGTGTCCATGCGGATAGTAGTCGCATTAAAGTGGTGTTTTGGCATGAGATGAAAGGTCCTGGTCAACAAGCGA
TTGACGCCTACGTTAAAGCGTTTAATCACCAACAGTCCAAATATGAAGTTGTAGCCGAGTTTGAGGGTGGCTATAATGGC
GTCATTCAAAAAATCTTGAATACGCATGGGACGGCCGCGTCACCAGCGCTATTTCAATCGATGGATATTTCCACCAGTCA
GATGTATCACAGTGGTTTCACGACACCGATGCAGAAATTTATTGACCGTGACCATTACGATGCTGATCAAATCATTCCGG
GCGCCAAGGCGATCGTGATGCGCGACAATCAATTGCTAGCAATGCCGTTTAATGCATCGCAAACGGCGCTTTATTATAAT
AAGAGGGTCTTGCGTCAGTACGGGATTACGCCGCCGCCAGTGGATCCGACTTACGATGATATCACGCGAGTCGCTAAGGC
CATCCACGACAAATCCCACGGCAAAGTCAAGGGAATGACAATGGAGGCCTATTCGTGGCTATTCGAGCAGCTGGTCGCTA
ACGCAGGTGTTCCCGTTGCCAATCATGATAATGGTCATACTGGCAATGCGACTAAGGTCGACTTTACGAGTCCCGCGGCG
ATCAATGCGATGAAGTGGGTTAAAGAAAATATTGACTATGGTGACTTTATGAACTTTGGTTCGGGTGGTAATGCTGCTGC
AAATGAAGCAGCTTCTTTCTTGGCAGGCCATTTGGGTATCTTCATGCAATCGTCCGCGAACACGGGTCAGTTGTATCAAG
TGCTCAAAAATGATCTAGGTGTCACATATTTCCCACGGCCGAATGGTCAGAGAGCCAACGGAATCGCAGTTGGTGGGGCG
GCACTTTGGATTGCGAACGATAAACCAAGCGCGGTCCAAGATGGCGCGTGGGAATTCACTAAGTTTCTCGCTAGCGCACA
GACGCAAGCCGATTGGCAAGCCAAGACTGGTTATTTAGCCGTTAATAAGGGGGCTAAGGACGAGCCAACGCTGAAAAAAC
TATTCAAGAAGTCGCCGGTCCTAGAAGTTTCTGGTAATCAGATGCTACGAACGAAGCCTAATAATACGAACTCAGGTGTC
TTTGTCGATGGTTGGGTTCCCGCACGGACGGCGATTCAAACGGCGATGCAGCAGATTTTTGCAGGCCAAGATATTCGACA
ATCGTTGCAAACGGCTGAAAATACGTACAATAAAGTGTTAGAATCAAATAACCGTGCAAACGGTCGTCATTAA

Upstream 100 bases:

>100_bases
TCGTTCAGGCGAGTGCCGCCATCGTGGTGATTCCAACATTGATTGTCCTTTTCTGGGGGCAACACTACTTTAAATCTGGA
TTGAATGAAGGTTCGGTGAA

Downstream 100 bases:

>100_bases
TTGGAAAGAGTTGAAGAATTGTGCCAAATATGTCGTTGATTTATGGTCATCGGGGCGTTCCCGTTAAGTTTCCTGAGAAT
TCGCTAGCTGGGTTTGCGTA

Product: sugar ABC transporter, substrate binding protein (putative)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
MMKITRKWQWLAGMMVVLLVVGGVAYSRTRVHADSSRIKVVFWHEMKGPGQQAIDAYVKAFNHQQSKYEVVAEFEGGYNG
VIQKILNTHGTAASPALFQSMDISTSQMYHSGFTTPMQKFIDRDHYDADQIIPGAKAIVMRDNQLLAMPFNASQTALYYN
KRVLRQYGITPPPVDPTYDDITRVAKAIHDKSHGKVKGMTMEAYSWLFEQLVANAGVPVANHDNGHTGNATKVDFTSPAA
INAMKWVKENIDYGDFMNFGSGGNAAANEAASFLAGHLGIFMQSSANTGQLYQVLKNDLGVTYFPRPNGQRANGIAVGGA
ALWIANDKPSAVQDGAWEFTKFLASAQTQADWQAKTGYLAVNKGAKDEPTLKKLFKKSPVLEVSGNQMLRTKPNNTNSGV
FVDGWVPARTAIQTAMQQIFAGQDIRQSLQTAENTYNKVLESNNRANGRH

Sequences:

>Translated_450_residues
MMKITRKWQWLAGMMVVLLVVGGVAYSRTRVHADSSRIKVVFWHEMKGPGQQAIDAYVKAFNHQQSKYEVVAEFEGGYNG
VIQKILNTHGTAASPALFQSMDISTSQMYHSGFTTPMQKFIDRDHYDADQIIPGAKAIVMRDNQLLAMPFNASQTALYYN
KRVLRQYGITPPPVDPTYDDITRVAKAIHDKSHGKVKGMTMEAYSWLFEQLVANAGVPVANHDNGHTGNATKVDFTSPAA
INAMKWVKENIDYGDFMNFGSGGNAAANEAASFLAGHLGIFMQSSANTGQLYQVLKNDLGVTYFPRPNGQRANGIAVGGA
ALWIANDKPSAVQDGAWEFTKFLASAQTQADWQAKTGYLAVNKGAKDEPTLKKLFKKSPVLEVSGNQMLRTKPNNTNSGV
FVDGWVPARTAIQTAMQQIFAGQDIRQSLQTAENTYNKVLESNNRANGRH
>Mature_450_residues
MMKITRKWQWLAGMMVVLLVVGGVAYSRTRVHADSSRIKVVFWHEMKGPGQQAIDAYVKAFNHQQSKYEVVAEFEGGYNG
VIQKILNTHGTAASPALFQSMDISTSQMYHSGFTTPMQKFIDRDHYDADQIIPGAKAIVMRDNQLLAMPFNASQTALYYN
KRVLRQYGITPPPVDPTYDDITRVAKAIHDKSHGKVKGMTMEAYSWLFEQLVANAGVPVANHDNGHTGNATKVDFTSPAA
INAMKWVKENIDYGDFMNFGSGGNAAANEAASFLAGHLGIFMQSSANTGQLYQVLKNDLGVTYFPRPNGQRANGIAVGGA
ALWIANDKPSAVQDGAWEFTKFLASAQTQADWQAKTGYLAVNKGAKDEPTLKKLFKKSPVLEVSGNQMLRTKPNNTNSGV
FVDGWVPARTAIQTAMQQIFAGQDIRQSLQTAENTYNKVLESNNRANGRH

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=410, Percent_Identity=25.3658536585366, Blast_Score=145, Evalue=6e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 49510; Mature: 49510

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKITRKWQWLAGMMVVLLVVGGVAYSRTRVHADSSRIKVVFWHEMKGPGQQAIDAYVKA
CCCCCHHHHHHHHHHHHHHHHCCHHHHHEEEECCCCCEEEEEEECCCCCHHHHHHHHHHH
FNHQQSKYEVVAEFEGGYNGVIQKILNTHGTAASPALFQSMDISTSQMYHSGFTTPMQKF
HCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHCCCCHHHHHH
IDRDHYDADQIIPGAKAIVMRDNQLLAMPFNASQTALYYNKRVLRQYGITPPPVDPTYDD
HCCCCCCHHHCCCCCEEEEEECCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH
ITRVAKAIHDKSHGKVKGMTMEAYSWLFEQLVANAGVPVANHDNGHTGNATKVDFTSPAA
HHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHH
INAMKWVKENIDYGDFMNFGSGGNAAANEAASFLAGHLGIFMQSSANTGQLYQVLKNDLG
HHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHCCC
VTYFPRPNGQRANGIAVGGAALWIANDKPSAVQDGAWEFTKFLASAQTQADWQAKTGYLA
EEECCCCCCCCCCCEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEE
VNKGAKDEPTLKKLFKKSPVLEVSGNQMLRTKPNNTNSGVFVDGWVPARTAIQTAMQQIF
ECCCCCCCHHHHHHHHHCCCEEECCCEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHH
AGQDIRQSLQTAENTYNKVLESNNRANGRH
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MMKITRKWQWLAGMMVVLLVVGGVAYSRTRVHADSSRIKVVFWHEMKGPGQQAIDAYVKA
CCCCCHHHHHHHHHHHHHHHHCCHHHHHEEEECCCCCEEEEEEECCCCCHHHHHHHHHHH
FNHQQSKYEVVAEFEGGYNGVIQKILNTHGTAASPALFQSMDISTSQMYHSGFTTPMQKF
HCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHCCCCHHHHHH
IDRDHYDADQIIPGAKAIVMRDNQLLAMPFNASQTALYYNKRVLRQYGITPPPVDPTYDD
HCCCCCCHHHCCCCCEEEEEECCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH
ITRVAKAIHDKSHGKVKGMTMEAYSWLFEQLVANAGVPVANHDNGHTGNATKVDFTSPAA
HHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHH
INAMKWVKENIDYGDFMNFGSGGNAAANEAASFLAGHLGIFMQSSANTGQLYQVLKNDLG
HHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHCCC
VTYFPRPNGQRANGIAVGGAALWIANDKPSAVQDGAWEFTKFLASAQTQADWQAKTGYLA
EEECCCCCCCCCCCEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEE
VNKGAKDEPTLKKLFKKSPVLEVSGNQMLRTKPNNTNSGVFVDGWVPARTAIQTAMQQIF
ECCCCCCCHHHHHHHHHCCCEEECCCEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHH
AGQDIRQSLQTAENTYNKVLESNNRANGRH
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]