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The map label for this gene is araQ [H]

Identifier: 28378074

GI number: 28378074

Start: 1220980

End: 1221810

Strand: Direct

Name: araQ [H]

Synonym: lp_1326

Alternate gene names: 28378074

Gene position: 1220980-1221810 (Clockwise)

Preceding gene: 28378073

Following gene: 28378075

Centisome position: 36.91

GC content: 44.04

Gene sequence:

>831_bases
ATGGCTACTCAAGCCCTGATTCGACATCGAATCGGTATCGGATTCCGGTACTTGTTATTAATTACATTAACGTTAGTCAT
TATTTTACCGTTTGTTTTAGGGTTGTGGACCAGCTTTTTACCAACGACGACTATTGCGAAAGGATCACTGAGCGGAACCC
TTTCTTGGCAGAACTATCAGGATGCGTTCACCAAAACACCCATTCTTCGCTACTTATTTAACAGTTTAGTGATCTCAATC
ATTCAGATGATTGCTCATCTGTTTTTTGCATCAATTGCCGCCTACGCCTTTGTGTTTTTAGAATTTAAGTATCGGGATGC
GTTGTTCTACTTGGTCTTGGCAACTATGATGCTACCATTTGAAGCTGAAGTGATTCCGAACTTTCACACGGTCCGTGCGA
TGCACTTGTTGAATCACTATGCGGTGATGGTTATCCCGTTCTTAACTTCGGCCTTTGGTATCTTCATGTTACGCCAAGCC
TTTCTGCAAATTCCACGAGACTTAAAGGAAGCCGCTGATGTTGATGGTCTCTCACACTGGCAATTTTACTGTCGCGTTGC
CTTACCATACTCACGGATTAGTTTATTGACGCTAGCTGCTTACAGCTTTTTAGGAAGCTGGAACCAATATTTATGGCCAA
TGCTAACCACGTTTTCAAATCGGCTACGTCCGGTCCAAGATGGATTGCGGCAATTGCATTCGGAGGAAACCGCTACGAAT
TGGGGACTCGTTCAGGCGAGTGCCGCCATCGTGGTGATTCCAACATTGATTGTCCTTTTCTGGGGGCAACACTACTTTAA
ATCTGGATTGAATGAAGGTTCGGTGAAATGA

Upstream 100 bases:

>100_bases
CTAGCACGGAATCGATCATACTAGCAATCATTATTGCAGCGATTACGGTAATCCAATTCAAACTTTTAGCAAAGCGGGTG
CATTACTAATGGAAAATACA

Downstream 100 bases:

>100_bases
TGAAGATAACGCGAAAGTGGCAGTGGCTAGCCGGTATGATGGTTGTCCTCTTGGTAGTGGGTGGGGTCGCTTATAGTCGG
ACCCGTGTCCATGCGGATAG

Product: sugar ABC transporter, permease protein (putative)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MATQALIRHRIGIGFRYLLLITLTLVIILPFVLGLWTSFLPTTTIAKGSLSGTLSWQNYQDAFTKTPILRYLFNSLVISI
IQMIAHLFFASIAAYAFVFLEFKYRDALFYLVLATMMLPFEAEVIPNFHTVRAMHLLNHYAVMVIPFLTSAFGIFMLRQA
FLQIPRDLKEAADVDGLSHWQFYCRVALPYSRISLLTLAAYSFLGSWNQYLWPMLTTFSNRLRPVQDGLRQLHSEETATN
WGLVQASAAIVVIPTLIVLFWGQHYFKSGLNEGSVK

Sequences:

>Translated_276_residues
MATQALIRHRIGIGFRYLLLITLTLVIILPFVLGLWTSFLPTTTIAKGSLSGTLSWQNYQDAFTKTPILRYLFNSLVISI
IQMIAHLFFASIAAYAFVFLEFKYRDALFYLVLATMMLPFEAEVIPNFHTVRAMHLLNHYAVMVIPFLTSAFGIFMLRQA
FLQIPRDLKEAADVDGLSHWQFYCRVALPYSRISLLTLAAYSFLGSWNQYLWPMLTTFSNRLRPVQDGLRQLHSEETATN
WGLVQASAAIVVIPTLIVLFWGQHYFKSGLNEGSVK
>Mature_275_residues
ATQALIRHRIGIGFRYLLLITLTLVIILPFVLGLWTSFLPTTTIAKGSLSGTLSWQNYQDAFTKTPILRYLFNSLVISII
QMIAHLFFASIAAYAFVFLEFKYRDALFYLVLATMMLPFEAEVIPNFHTVRAMHLLNHYAVMVIPFLTSAFGIFMLRQAF
LQIPRDLKEAADVDGLSHWQFYCRVALPYSRISLLTLAAYSFLGSWNQYLWPMLTTFSNRLRPVQDGLRQLHSEETATNW
GLVQASAAIVVIPTLIVLFWGQHYFKSGLNEGSVK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=212, Percent_Identity=29.7169811320755, Blast_Score=127, Evalue=6e-31,
Organism=Escherichia coli, GI1787571, Length=297, Percent_Identity=31.986531986532, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31502; Mature: 31370

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
ATQALIRHRIGIGFRYLLLITLTLVIILPFVLGLWTSFLPTTTIAKGSLSGTLSWQNYQ
CHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCHHH
DAFTKTPILRYLFNSLVISIIQMIAHLFFASIAAYAFVFLEFKYRDALFYLVLATMMLPF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EAEVIPNFHTVRAMHLLNHYAVMVIPFLTSAFGIFMLRQAFLQIPRDLKEAADVDGLSHW
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHH
QFYCRVALPYSRISLLTLAAYSFLGSWNQYLWPMLTTFSNRLRPVQDGLRQLHSEETATN
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
WGLVQASAAIVVIPTLIVLFWGQHYFKSGLNEGSVK
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]