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The map label for this gene is cydB [H]

Identifier: 28377911

GI number: 28377911

Start: 1025322

End: 1026317

Strand: Direct

Name: cydB [H]

Synonym: lp_1126

Alternate gene names: 28377911

Gene position: 1025322-1026317 (Clockwise)

Preceding gene: 28377910

Following gene: 28377912

Centisome position: 30.99

GC content: 45.68

Gene sequence:

>996_bases
ATGAGTAATCTACAATTCTTATGGTTTATTCTGGTGGGCGTTCTATTTAGTGGTTTCTTCTTCCTTGAAGGTTTTGACTT
CGGGGTTGGGATGACGATTAAGAGCTTAGCCCAAACACGCGCTGAGCGCGATGTTGTGATTCATACGATTGGCCCACATT
GGGATGCCAATGAAGTGTGGTTGATCACTGCTGGTGGGGCGATGTTTGCGTCGTTCCCAATGTGGTATGCTTCCTTATTC
TCCGGATTCTATCTTATCTTATTGTTGATTCTAGTGGCCCTCATTATGCGAGGGGTCTCATTTGAATTTAGAAGTCGGAT
GGAAAGTGACGCCGGCCGGAATTTCTGGGAATGGGCCGCAGCCCTAGGTAGTTTCTTTGCTGCCTTCCTATTTGGGATGA
TGTTTACTGCTTTGGTCAAAGGGATGCCAATCAATGCCAATGGCGATATGACTGCCCACTTCACCGATTACGTGAACTTG
TTCTCAATCGTTGGTGGGGTTGCCGTAACGTTACTCTGCTATTTGCACGGGTTAAACTTTATTCGTCTGAAGACGACCGG
GACGTTGCGTGAACGGGCGCTTCAGTGGGCCAAACCGTTATACTGGGTCCTGTTTGCCGGTGAAGTTGTCTTCGCAATTC
TGCTGTTCTTTAACACCGATTTCTTTACCAAGAAACCAATCTCAACCACGATTTTAGTGGTCGCCTTAGTGGCTTTGACG
GTCTTGGCAACTTGGGGTGTTTATGGAAATCATGAATGGCTCTCATTTATTAGCAGTGGTCTCTCACTGATCGACGTGGT
CGTGCTCCTGTTCAATGGACTATTCCCACGTGTCATGGTGGCGAACAATTCTGCATACAGCATTCTGATTAAAGATGCGT
CTAATTCACCATATACGTTGCATCTGATGACTGTAATCTCATTATCGGTATTACCGATTATGTTGATCTACTTTATTTGG
AGTTACTGGGTCTTCTATAAACGGTTGGCATCGTAA

Upstream 100 bases:

>100_bases
ATCGTCTTATCACGGCGTGCCTTACACCAAGGACCTGATGATTTGTTACAAGCTAGCGATGACGCACCGTACGATCCTTA
TGGTAAGGAGGCGTTCAGTC

Downstream 100 bases:

>100_bases
TTCAAATGCAGATGACGACAGTATCACTGGTGCGGTGGTACAATTAATTTAACAGCACCAACGGGGTCGCGACCTTGGCC
AAGTGCCAGGGTGCGACCCC

Product: cytochrome D ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MSNLQFLWFILVGVLFSGFFFLEGFDFGVGMTIKSLAQTRAERDVVIHTIGPHWDANEVWLITAGGAMFASFPMWYASLF
SGFYLILLLILVALIMRGVSFEFRSRMESDAGRNFWEWAAALGSFFAAFLFGMMFTALVKGMPINANGDMTAHFTDYVNL
FSIVGGVAVTLLCYLHGLNFIRLKTTGTLRERALQWAKPLYWVLFAGEVVFAILLFFNTDFFTKKPISTTILVVALVALT
VLATWGVYGNHEWLSFISSGLSLIDVVVLLFNGLFPRVMVANNSAYSILIKDASNSPYTLHLMTVISLSVLPIMLIYFIW
SYWVFYKRLAS

Sequences:

>Translated_331_residues
MSNLQFLWFILVGVLFSGFFFLEGFDFGVGMTIKSLAQTRAERDVVIHTIGPHWDANEVWLITAGGAMFASFPMWYASLF
SGFYLILLLILVALIMRGVSFEFRSRMESDAGRNFWEWAAALGSFFAAFLFGMMFTALVKGMPINANGDMTAHFTDYVNL
FSIVGGVAVTLLCYLHGLNFIRLKTTGTLRERALQWAKPLYWVLFAGEVVFAILLFFNTDFFTKKPISTTILVVALVALT
VLATWGVYGNHEWLSFISSGLSLIDVVVLLFNGLFPRVMVANNSAYSILIKDASNSPYTLHLMTVISLSVLPIMLIYFIW
SYWVFYKRLAS
>Mature_330_residues
SNLQFLWFILVGVLFSGFFFLEGFDFGVGMTIKSLAQTRAERDVVIHTIGPHWDANEVWLITAGGAMFASFPMWYASLFS
GFYLILLLILVALIMRGVSFEFRSRMESDAGRNFWEWAAALGSFFAAFLFGMMFTALVKGMPINANGDMTAHFTDYVNLF
SIVGGVAVTLLCYLHGLNFIRLKTTGTLRERALQWAKPLYWVLFAGEVVFAILLFFNTDFFTKKPISTTILVVALVALTV
LATWGVYGNHEWLSFISSGLSLIDVVVLLFNGLFPRVMVANNSAYSILIKDASNSPYTLHLMTVISLSVLPIMLIYFIWS
YWVFYKRLAS

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=365, Percent_Identity=33.6986301369863, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1787213, Length=366, Percent_Identity=29.5081967213115, Blast_Score=147, Evalue=7e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37280; Mature: 37149

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNLQFLWFILVGVLFSGFFFLEGFDFGVGMTIKSLAQTRAERDVVIHTIGPHWDANEVW
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEE
LITAGGAMFASFPMWYASLFSGFYLILLLILVALIMRGVSFEFRSRMESDAGRNFWEWAA
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHH
ALGSFFAAFLFGMMFTALVKGMPINANGDMTAHFTDYVNLFSIVGGVAVTLLCYLHGLNF
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCE
IRLKTTGTLRERALQWAKPLYWVLFAGEVVFAILLFFNTDFFTKKPISTTILVVALVALT
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
VLATWGVYGNHEWLSFISSGLSLIDVVVLLFNGLFPRVMVANNSAYSILIKDASNSPYTL
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEEECCCCCEEE
HLMTVISLSVLPIMLIYFIWSYWVFYKRLAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SNLQFLWFILVGVLFSGFFFLEGFDFGVGMTIKSLAQTRAERDVVIHTIGPHWDANEVW
CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEE
LITAGGAMFASFPMWYASLFSGFYLILLLILVALIMRGVSFEFRSRMESDAGRNFWEWAA
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHH
ALGSFFAAFLFGMMFTALVKGMPINANGDMTAHFTDYVNLFSIVGGVAVTLLCYLHGLNF
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCE
IRLKTTGTLRERALQWAKPLYWVLFAGEVVFAILLFFNTDFFTKKPISTTILVVALVALT
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
VLATWGVYGNHEWLSFISSGLSLIDVVVLLFNGLFPRVMVANNSAYSILIKDASNSPYTL
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEEECCCCCEEE
HLMTVISLSVLPIMLIYFIWSYWVFYKRLAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]