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The map label for this gene is cydA [H]

Identifier: 28377910

GI number: 28377910

Start: 1023890

End: 1025329

Strand: Direct

Name: cydA [H]

Synonym: lp_1125

Alternate gene names: 28377910

Gene position: 1023890-1025329 (Clockwise)

Preceding gene: 28377908

Following gene: 28377911

Centisome position: 30.95

GC content: 45.62

Gene sequence:

>1440_bases
ATGAATCTCGGATTAAGTATTTTATCCTTGGCGCGCTTTCAGTTCGCGATGACCACGGTGTTTCATTTCTTCTTTGTGCC
ATTATCAATCGGCTTAGCCTTGGTTGTTGCCATCATGGAAACGGTGTATGTTGTCAAAAAAGACATCATGTACAAGCACA
TGGCACAATTTTGGGGCCGCATTTTCTTACTTAGCTTTGCCGTTGGTGTCGTGACAGGGATTATACAAGAATTCCAATTT
GGGATGAACTGGTCTGATTATTCACGGTTTATGGGTGACATTTTTGGGGCGCCACTAGCGATTGAAGCGTTAGTTGCCTT
CTTTATGGAATCCACGTTTATTGGGTTATGGATGTTTGGTTGGGATCGGTTTAATGCCAAGCTCCACTGTGCGTTTATCT
GGCTAACGTCGATTGGGACGATGATTTCCGCGATGTGGATTTTAGCAGCGAACAGTTTCATGCAAAATCCAGTTGGTTTC
ATGATCAATACCAAGACTGGTCGTGCACAGATGACGAGCTTTGCAGCAGTCGTCAAGAACGAACAGCTCTGGTATGAATT
ACCACATGTGTTGTTTGGGGCGTTTGTTACCGGCTCATTTGTGGTTGCTGGGATGGCGGCGTTTGCGTTACTCAAAAAGA
AAAACGTCACGTTCTTCCGCAAATCGATCAAGGTCAGTTTAATCGTTGGCCTGGTTGCTTCCATCGGTGTGATTGGAATG
GGAGATTTACAGACGCGTTACATCATTAAAGAACAACCGATGAAGTTTGCCGCAACGGAAGGCTTATATAAGGATTCCGG
CTCGCCAGCTTCATGGGCAGTTATTGAAGGGATGGATACTAAGAACCATAAGGCCAACTGGTCGATTGAAATCCCGTATG
TGTTGGATATTTTAAGCTATCATAAGTTGTCCGGTAATGTGAAGGGACAAAATACCCTTAACAAGGAACTTCATGCCAAG
TATGACAAGAAATTTGGTAAGGACATGAACTACTACGTGCCAACAAAGACGCTTTTCTGGAGCTTCCGGGTCATGACGGT
AGCTGGTGGGCTCTTCGCACTGATTGCCATTATCGGTCTATACTTCAACCGTGCAAAGTCAACGCTGATTGAGCGGCAGC
GCTGGTTCCTGTGGGTACTAGGAATCTGTACGTTCTTACCATTCGCCGCAAACACGGCCGGGTGGCTGATTACTGAATTA
GGTCGTTATCCATGGGTTGTTTATGGTTTACTGACGATTGCAGATGCCGTTTCACCAAATGTTAGTGTCGCTTCGTTGCT
GATCTCTAACATCGTGTACTTCTGCTTGTTCAGTGGCTTAGGCATTGTCATGATCGTCTTATCACGGCGTGCCTTACACC
AAGGACCTGATGATTTGTTACAAGCTAGCGATGACGCACCGTACGATCCTTATGGTAAGGAGGCGTTCAGTCATGAGTAA

Upstream 100 bases:

>100_bases
GTTGAGATTGATTGAAATTTCACTTATCACTTGCTATTATGAAAGGTGAATAAAGTGTTTCCGCTTTCGTAGGGAATAAA
TTAATAAAGGGGGGACCATT

Downstream 100 bases:

>100_bases
TCTACAATTCTTATGGTTTATTCTGGTGGGCGTTCTATTTAGTGGTTTCTTCTTCCTTGAAGGTTTTGACTTCGGGGTTG
GGATGACGATTAAGAGCTTA

Product: cytochrome D ubiquinol oxidase, subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 479; Mature: 479

Protein sequence:

>479_residues
MNLGLSILSLARFQFAMTTVFHFFFVPLSIGLALVVAIMETVYVVKKDIMYKHMAQFWGRIFLLSFAVGVVTGIIQEFQF
GMNWSDYSRFMGDIFGAPLAIEALVAFFMESTFIGLWMFGWDRFNAKLHCAFIWLTSIGTMISAMWILAANSFMQNPVGF
MINTKTGRAQMTSFAAVVKNEQLWYELPHVLFGAFVTGSFVVAGMAAFALLKKKNVTFFRKSIKVSLIVGLVASIGVIGM
GDLQTRYIIKEQPMKFAATEGLYKDSGSPASWAVIEGMDTKNHKANWSIEIPYVLDILSYHKLSGNVKGQNTLNKELHAK
YDKKFGKDMNYYVPTKTLFWSFRVMTVAGGLFALIAIIGLYFNRAKSTLIERQRWFLWVLGICTFLPFAANTAGWLITEL
GRYPWVVYGLLTIADAVSPNVSVASLLISNIVYFCLFSGLGIVMIVLSRRALHQGPDDLLQASDDAPYDPYGKEAFSHE

Sequences:

>Translated_479_residues
MNLGLSILSLARFQFAMTTVFHFFFVPLSIGLALVVAIMETVYVVKKDIMYKHMAQFWGRIFLLSFAVGVVTGIIQEFQF
GMNWSDYSRFMGDIFGAPLAIEALVAFFMESTFIGLWMFGWDRFNAKLHCAFIWLTSIGTMISAMWILAANSFMQNPVGF
MINTKTGRAQMTSFAAVVKNEQLWYELPHVLFGAFVTGSFVVAGMAAFALLKKKNVTFFRKSIKVSLIVGLVASIGVIGM
GDLQTRYIIKEQPMKFAATEGLYKDSGSPASWAVIEGMDTKNHKANWSIEIPYVLDILSYHKLSGNVKGQNTLNKELHAK
YDKKFGKDMNYYVPTKTLFWSFRVMTVAGGLFALIAIIGLYFNRAKSTLIERQRWFLWVLGICTFLPFAANTAGWLITEL
GRYPWVVYGLLTIADAVSPNVSVASLLISNIVYFCLFSGLGIVMIVLSRRALHQGPDDLLQASDDAPYDPYGKEAFSHE
>Mature_479_residues
MNLGLSILSLARFQFAMTTVFHFFFVPLSIGLALVVAIMETVYVVKKDIMYKHMAQFWGRIFLLSFAVGVVTGIIQEFQF
GMNWSDYSRFMGDIFGAPLAIEALVAFFMESTFIGLWMFGWDRFNAKLHCAFIWLTSIGTMISAMWILAANSFMQNPVGF
MINTKTGRAQMTSFAAVVKNEQLWYELPHVLFGAFVTGSFVVAGMAAFALLKKKNVTFFRKSIKVSLIVGLVASIGVIGM
GDLQTRYIIKEQPMKFAATEGLYKDSGSPASWAVIEGMDTKNHKANWSIEIPYVLDILSYHKLSGNVKGQNTLNKELHAK
YDKKFGKDMNYYVPTKTLFWSFRVMTVAGGLFALIAIIGLYFNRAKSTLIERQRWFLWVLGICTFLPFAANTAGWLITEL
GRYPWVVYGLLTIADAVSPNVSVASLLISNIVYFCLFSGLGIVMIVLSRRALHQGPDDLLQASDDAPYDPYGKEAFSHE

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=510, Percent_Identity=33.921568627451, Blast_Score=289, Evalue=3e-79,
Organism=Escherichia coli, GI1787212, Length=506, Percent_Identity=33.7944664031621, Blast_Score=288, Evalue=5e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 53712; Mature: 53712

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCHHCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]