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The map label for this gene is citD

Identifier: 28377895

GI number: 28377895

Start: 1005429

End: 1005719

Strand: Direct

Name: citD

Synonym: lp_1107

Alternate gene names: 28377895

Gene position: 1005429-1005719 (Clockwise)

Preceding gene: 28377894

Following gene: 28377896

Centisome position: 30.39

GC content: 46.74

Gene sequence:

>291_bases
ATGGAAATTAAGACAACGGCAGTCGCCGGAACCTTGGAATCATCTGATATTCAAATTATGTTAATGGCGGGAGACAACGG
CATTCAAATCGACCTTGAATCGGATGTTATCAAACAGTTCGGGGCACAAATCAAGCACGTGATCACGACGACGCTTCAAC
AATTGAATATCGATAATGTGAAGGTGCGCGCTGTTGATAAAGGGGCGTTGGACTGCGTCATTAAAGCGCGGACCATTACG
GCAGCACAACGGGCGTTAGAAACCACGACACCAGCATGGGAGGTATTATAA

Upstream 100 bases:

>100_bases
TTAACTGAGTTAAACCAACTGGTACCGGCAACAACGGCCCAGTTTATAAAAAATAACCTAACAACATTACAAGCGCGAAT
TCAGAAAGGAATGAAAATTG

Downstream 100 bases:

>100_bases
TGGCTGAAAATGAAGAACGCTTACGGCGGACAATGATGTTTGTACCTGGTAATAATCCAGCCATGGTAAAGGATGCCGGG
ATTTACGGTGCAGACTCGAT

Product: citrate lyase subunit gamma

Products: acetate; oxaloacetate

Alternate protein names: Citrate lyase gamma chain

Number of amino acids: Translated: 96; Mature: 96

Protein sequence:

>96_residues
MEIKTTAVAGTLESSDIQIMLMAGDNGIQIDLESDVIKQFGAQIKHVITTTLQQLNIDNVKVRAVDKGALDCVIKARTIT
AAQRALETTTPAWEVL

Sequences:

>Translated_96_residues
MEIKTTAVAGTLESSDIQIMLMAGDNGIQIDLESDVIKQFGAQIKHVITTTLQQLNIDNVKVRAVDKGALDCVIKARTIT
AAQRALETTTPAWEVL
>Mature_96_residues
MEIKTTAVAGTLESSDIQIMLMAGDNGIQIDLESDVIKQFGAQIKHVITTTLQQLNIDNVKVRAVDKGALDCVIKARTIT
AAQRALETTTPAWEVL

Specific function: Covalent carrier of the coenzyme of citrate lyase

COG id: COG3052

COG function: function code C; Citrate lyase, gamma subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitD family

Homologues:

Organism=Escherichia coli, GI1786834, Length=95, Percent_Identity=40, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CITD_LACPL (Q88XS8)

Other databases:

- EMBL:   AL935255
- RefSeq:   NP_784787.1
- GeneID:   1063320
- GenomeReviews:   AL935263_GR
- KEGG:   lpl:lp_1107
- NMPDR:   fig|220668.1.peg.921
- HOGENOM:   HBG359308
- OMA:   LAGTFES
- ProtClustDB:   PRK13253
- BioCyc:   LPLA220668:LP_1107-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00805
- InterPro:   IPR006495
- InterPro:   IPR009662
- PIRSF:   PIRSF002736
- ProDom:   PD015389
- TIGRFAMs:   TIGR01608

Pfam domain/function: PF06857 MdcD

EC number: 4.1.3.6

Molecular weight: Translated: 10394; Mature: 10394

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIKTTAVAGTLESSDIQIMLMAGDNGIQIDLESDVIKQFGAQIKHVITTTLQQLNIDNV
CCEECCEEECEECCCCEEEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCE
KVRAVDKGALDCVIKARTITAAQRALETTTPAWEVL
EEEEECCCCEEEEEEHHHHHHHHHHHHCCCCCEECC
>Mature Secondary Structure
MEIKTTAVAGTLESSDIQIMLMAGDNGIQIDLESDVIKQFGAQIKHVITTTLQQLNIDNV
CCEECCEEECEECCCCEEEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCE
KVRAVDKGALDCVIKARTITAAQRALETTTPAWEVL
EEEEECCCCEEEEEEHHHHHHHHHHHHCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: citrate

Specific reaction: citrate = acetate + oxaloacetate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12566566