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The map label for this gene is cspC [H]

Identifier: 28377809

GI number: 28377809

Start: 921009

End: 921209

Strand: Direct

Name: cspC [H]

Synonym: lp_0997

Alternate gene names: 28377809

Gene position: 921009-921209 (Clockwise)

Preceding gene: 28377808

Following gene: 28377810

Centisome position: 27.84

GC content: 43.28

Gene sequence:

>201_bases
ATGGAACACGGAACAGTTAAATGGTTCAACGCTGATAAGGGTTTTGGTTTTATCACTCGCGAAAACGGTAGCGATGTATT
CGTACATTTCTCAGCTATCCAAGAAGACGGCTTCAAGAGTCTTGATGAAGGCCAAGCTGTAAACTTCGACGTTGAAGAAA
GCGATCGTGGCCCACAAGCAGTTAACGTTACAAAAGCATAA

Upstream 100 bases:

>100_bases
TAATTTTGGTCAGATCGTTTCAATAAACTATCCCCATTTGTACCGAATCATGATTTACATTATTTTATACGTGCAAAATG
CACTAGGAGGATTTTTTATT

Downstream 100 bases:

>100_bases
TTAACAGCTTAAATGGCTTAAACCGGTGATGAGAATTAATTCTCATCACCGGTTTTTTGTCGTTTTGCAGCGGATGCTTA
ATTATCATAAATAAAGCTTT

Product: cold shock protein CspC

Products: NA

Alternate protein names: CspL [H]

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MEHGTVKWFNADKGFGFITRENGSDVFVHFSAIQEDGFKSLDEGQAVNFDVEESDRGPQAVNVTKA

Sequences:

>Translated_66_residues
MEHGTVKWFNADKGFGFITRENGSDVFVHFSAIQEDGFKSLDEGQAVNFDVEESDRGPQAVNVTKA
>Mature_66_residues
MEHGTVKWFNADKGFGFITRENGSDVFVHFSAIQEDGFKSLDEGQAVNFDVEESDRGPQAVNVTKA

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1789979, Length=62, Percent_Identity=72.5806451612903, Blast_Score=91, Evalue=1e-20,
Organism=Escherichia coli, GI1788126, Length=62, Percent_Identity=66.1290322580645, Blast_Score=83, Evalue=4e-18,
Organism=Escherichia coli, GI2367114, Length=61, Percent_Identity=63.9344262295082, Blast_Score=82, Evalue=6e-18,
Organism=Escherichia coli, GI1786841, Length=61, Percent_Identity=65.5737704918033, Blast_Score=81, Evalue=1e-17,
Organism=Escherichia coli, GI1787839, Length=61, Percent_Identity=63.9344262295082, Blast_Score=80, Evalue=2e-17,
Organism=Escherichia coli, GI1787834, Length=62, Percent_Identity=61.2903225806452, Blast_Score=77, Evalue=2e-16,
Organism=Escherichia coli, GI1787107, Length=61, Percent_Identity=55.7377049180328, Blast_Score=73, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7308; Mature: 7308

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHGTVKWFNADKGFGFITRENGSDVFVHFSAIQEDGFKSLDEGQAVNFDVEESDRGPQA
CCCCEEEEEECCCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCE
VNVTKA
EEEECC
>Mature Secondary Structure
MEHGTVKWFNADKGFGFITRENGSDVFVHFSAIQEDGFKSLDEGQAVNFDVEESDRGPQA
CCCCEEEEEECCCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCE
VNVTKA
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669; 9439003 [H]