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The map label for this gene is ideR [H]

Identifier: 28377808

GI number: 28377808

Start: 920110

End: 920757

Strand: Direct

Name: ideR [H]

Synonym: lp_0996

Alternate gene names: 28377808

Gene position: 920110-920757 (Clockwise)

Preceding gene: 28377805

Following gene: 28377809

Centisome position: 27.81

GC content: 44.14

Gene sequence:

>648_bases
ATGACCCCCATGAAGGAAGATTACTTAAAAATTATTTTCGAGCTTGGTGGTACGAAAAAAAAGGTGTCGAATAAGCAAAT
TGCCTTAAGTTTAGACATCGCGGCCGGCTCTGTAACGGAGATGGTCGGTAAATTAGTTCAGGAAGGCTTGGCTAAGCATA
CCCCGTATGCTGGGATTTCGTTAACAAAGAAAGGCATTCGCTACGCTGAAACGTTAGTTCGCAAGCACCGAATCTGGGAA
GATTTCTTAGTTGATAAATTGGATTATGATTTGCCAGACGTGCATACGGAAGCGGAAGTGCTGGAGCATGTGACCAGTGA
ACGACTAGTGGATTCTTTGGAAGCCTTTTTAGGCAATCCGACGCATTGTCCGCATGGTGGCGCGATTCCCGATAAGGATG
GTCATTATCAGGAAGACAGTCATGTGAGTTTAGCAGATACGCAGGATGGCACAACGGTTACGATTGAGCGATTTATTGAT
AATCATGATTTATTAGTTTATTTGCATGATACACCGCTCAAGATTGGACAGCAGGTCACGGTTTTAAAGCACGATCCATT
TGAAGGCCCTGTTACCGTTTCCATTCAGAAAACGGGCGAGGAAATCCCAGTTAGCTATAAAGCGGCGCACAATGTCTTTG
TAAAGTAA

Upstream 100 bases:

>100_bases
CGTTATTAGAGACTAGAACTGGTGTCTCAATTGTAGTAAGATGTTAGAATTATATTAGAGAGAATCAGAAGTAACTATTT
AGTTGAGGTGAAGAATATTC

Downstream 100 bases:

>100_bases
GCATGCGGCACCTATTTCCGAACAAACCTGTTAATTGTTAGTTAGTTATTCTGTTTCATTTATCATCACATAAACATTTC
ATGGAAATCATGGTGTTTGG

Product: metal-dependent regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MTPMKEDYLKIIFELGGTKKKVSNKQIALSLDIAAGSVTEMVGKLVQEGLAKHTPYAGISLTKKGIRYAETLVRKHRIWE
DFLVDKLDYDLPDVHTEAEVLEHVTSERLVDSLEAFLGNPTHCPHGGAIPDKDGHYQEDSHVSLADTQDGTTVTIERFID
NHDLLVYLHDTPLKIGQQVTVLKHDPFEGPVTVSIQKTGEEIPVSYKAAHNVFVK

Sequences:

>Translated_215_residues
MTPMKEDYLKIIFELGGTKKKVSNKQIALSLDIAAGSVTEMVGKLVQEGLAKHTPYAGISLTKKGIRYAETLVRKHRIWE
DFLVDKLDYDLPDVHTEAEVLEHVTSERLVDSLEAFLGNPTHCPHGGAIPDKDGHYQEDSHVSLADTQDGTTVTIERFID
NHDLLVYLHDTPLKIGQQVTVLKHDPFEGPVTVSIQKTGEEIPVSYKAAHNVFVK
>Mature_214_residues
TPMKEDYLKIIFELGGTKKKVSNKQIALSLDIAAGSVTEMVGKLVQEGLAKHTPYAGISLTKKGIRYAETLVRKHRIWED
FLVDKLDYDLPDVHTEAEVLEHVTSERLVDSLEAFLGNPTHCPHGGAIPDKDGHYQEDSHVSLADTQDGTTVTIERFIDN
HDLLVYLHDTPLKIGQQVTVLKHDPFEGPVTVSIQKTGEEIPVSYKAAHNVFVK

Specific function: Metal-dependent DNA-binding protein that controls transcription of many genes involved in iron metabolism [H]

COG id: COG1321

COG function: function code K; Mn-dependent transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH dtxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007167
- InterPro:   IPR001367
- InterPro:   IPR022689
- InterPro:   IPR022687
- InterPro:   IPR008988
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02742 Fe_dep_repr_C; PF01325 Fe_dep_repress; PF04023 FeoA [H]

EC number: NA

Molecular weight: Translated: 23935; Mature: 23804

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: PS50944 HTH_DTXR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPMKEDYLKIIFELGGTKKKVSNKQIALSLDIAAGSVTEMVGKLVQEGLAKHTPYAGIS
CCCCHHHHHHHHHHHCCCHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCC
LTKKGIRYAETLVRKHRIWEDFLVDKLDYDLPDVHTEAEVLEHVTSERLVDSLEAFLGNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
THCPHGGAIPDKDGHYQEDSHVSLADTQDGTTVTIERFIDNHDLLVYLHDTPLKIGQQVT
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCCCCCCCCEEE
VLKHDPFEGPVTVSIQKTGEEIPVSYKAAHNVFVK
EEECCCCCCCEEEEEECCCCCCCEEHHHCCCEECC
>Mature Secondary Structure 
TPMKEDYLKIIFELGGTKKKVSNKQIALSLDIAAGSVTEMVGKLVQEGLAKHTPYAGIS
CCCHHHHHHHHHHHCCCHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCC
LTKKGIRYAETLVRKHRIWEDFLVDKLDYDLPDVHTEAEVLEHVTSERLVDSLEAFLGNP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
THCPHGGAIPDKDGHYQEDSHVSLADTQDGTTVTIERFIDNHDLLVYLHDTPLKIGQQVT
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCEEEEECCCCCCCCCEEE
VLKHDPFEGPVTVSIQKTGEEIPVSYKAAHNVFVK
EEECCCCCCCEEEEEECCCCCCCEEHHHCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]