Click here to switch to the map view.

The map label for this gene is 28377767

Identifier: 28377767

GI number: 28377767

Start: 873765

End: 874682

Strand: Direct

Name: 28377767

Synonym: lp_0941

Alternate gene names: NA

Gene position: 873765-874682 (Clockwise)

Preceding gene: 28377766

Following gene: 28377770

Centisome position: 26.41

GC content: 38.78

Gene sequence:

>918_bases
ATGGCACAGCATGTTAAGTTTCATCAGTATTTTTTTCAGTGGATGCAGCTCTATAAATTAGATGCGGTCCGTCCAGTGAC
TTATCGCAAATATGAAATGTCACATCGGCAATTGGTAACGTTAGCACCGGATCTAAAGATGGCTGATTTATCAAGGCTGA
CATATCAGCAATTGCTCAATGATTATGCGGAAACCCATGAACGGCAAACGACAATGGATTTTCATCGTCATTTAAAGGGC
TCGCTTATTGATGCATTGGAAGAAGGGTTTATCGATCGCGACCCAACACGAAAAGCAATTATCAAGGGAATTAAGCATCG
TCAGCATAAAACAAAGTATCTACATCAGTATGAGTTGCAGGCATTGTTAAATGAATTAAACCTGAACAACGAAGTCAATT
GGGACTACTTCATCTTGCTGATTGCTAAGACTGGAATTCGTTTTGCAGAAGCCTTGGGTGTTACTCCTGATGATTTCGAT
TTTGCGCACCAAACACTTTCAATTAGTAAAACTTGGGATTATAAATCAAACAAGAGTGATTTTGCACCTACCAAAAATAA
TTCATCAGTCCGTAAAGTACCGCTGGATTGGCAGACTGTGATTCAATTTTCCCAGCTGACTAAAAAGCTGCCCGAAGATC
AACCAATTTTTGTTCAAGCAAAAGTTTATAATGATACGGTTAATCATTATTTGGAGCGTTTATGTAAGCACGCATCTATT
CCTGTGATTTCAGTCCATGGTTTGCGACATACACATGCTTCATTATTATTGTATGCTGGTGTTAGTATCGCCTCAGTAGC
TCGACGGTTAGGTCATTCTAATATGACGACTACACAGCAGACTTATTTACACATCATTCAAGAATTAGAAAACCAGGATA
ACGATAAGGTCATGAAACATCTGGCAAGTCTAATATAG

Upstream 100 bases:

>100_bases
TATTTGTAAGTGTCAATTTTAGCCAAATGAATAATTATTCATGTATAAATGAGTTAGCGGCCGCACAAGTGGTTGTTAAC
TCATTTTTTGGAGGTTTCTT

Downstream 100 bases:

>100_bases
ACGATAGGATTTACATTAATAAGTGCAGATTAAAACGTCCTCGAATGTTGAGGGCGTTTTTCAGATTATACTCATTGGCA
GCGATAAGGTTATCAATCAA

Product: integrase

Products: NA

Alternate protein names: Phage Integrase; Integrase Family Protein; DNA Integration/Recombination/Invertion Protein; Phage Integrase Family Site Specific Recombinase; Phage Integrase Family Protein; DNA Integration/Recombination/Inversion Protein; Prophage; Phage-Related Integrase; Site-Specific Recombinase; Prophage Lp2 Integrase; Site-Specific Recombinase Phage Integrase Family; Prophage Lp3 Integrase; Tyrosine Recombinase XerC; Integrase/Recombinase Ripx; Phage Family Integrase; Prophage Lp4 Integrase; Integrase/Recombinase; Integrase Protein; Bacteriophage-Related Integrase; Site-Specific Recombinase XerD; Phage Integrase Family Integrase/Recombinase; Integrase Homolog; Tyrosine Recombinase XerD; Site-Specific Recombinase Prophage Lsa1 Integrase; Integrase Phage-Related Protein; Bacteriophage Integrase; Transcriptional Regulator XRE Family; Phage-Related Integrase Recombinase; Tyrosine Recombinase XerC-Like Protein; Integrase/Recombinase XerC

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MAQHVKFHQYFFQWMQLYKLDAVRPVTYRKYEMSHRQLVTLAPDLKMADLSRLTYQQLLNDYAETHERQTTMDFHRHLKG
SLIDALEEGFIDRDPTRKAIIKGIKHRQHKTKYLHQYELQALLNELNLNNEVNWDYFILLIAKTGIRFAEALGVTPDDFD
FAHQTLSISKTWDYKSNKSDFAPTKNNSSVRKVPLDWQTVIQFSQLTKKLPEDQPIFVQAKVYNDTVNHYLERLCKHASI
PVISVHGLRHTHASLLLYAGVSIASVARRLGHSNMTTTQQTYLHIIQELENQDNDKVMKHLASLI

Sequences:

>Translated_305_residues
MAQHVKFHQYFFQWMQLYKLDAVRPVTYRKYEMSHRQLVTLAPDLKMADLSRLTYQQLLNDYAETHERQTTMDFHRHLKG
SLIDALEEGFIDRDPTRKAIIKGIKHRQHKTKYLHQYELQALLNELNLNNEVNWDYFILLIAKTGIRFAEALGVTPDDFD
FAHQTLSISKTWDYKSNKSDFAPTKNNSSVRKVPLDWQTVIQFSQLTKKLPEDQPIFVQAKVYNDTVNHYLERLCKHASI
PVISVHGLRHTHASLLLYAGVSIASVARRLGHSNMTTTQQTYLHIIQELENQDNDKVMKHLASLI
>Mature_304_residues
AQHVKFHQYFFQWMQLYKLDAVRPVTYRKYEMSHRQLVTLAPDLKMADLSRLTYQQLLNDYAETHERQTTMDFHRHLKGS
LIDALEEGFIDRDPTRKAIIKGIKHRQHKTKYLHQYELQALLNELNLNNEVNWDYFILLIAKTGIRFAEALGVTPDDFDF
AHQTLSISKTWDYKSNKSDFAPTKNNSSVRKVPLDWQTVIQFSQLTKKLPEDQPIFVQAKVYNDTVNHYLERLCKHASIP
VISVHGLRHTHASLLLYAGVSIASVARRLGHSNMTTTQQTYLHIIQELENQDNDKVMKHLASLI

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35658; Mature: 35527

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQHVKFHQYFFQWMQLYKLDAVRPVTYRKYEMSHRQLVTLAPDLKMADLSRLTYQQLLN
CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH
DYAETHERQTTMDFHRHLKGSLIDALEEGFIDRDPTRKAIIKGIKHRQHKTKYLHQYELQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ALLNELNLNNEVNWDYFILLIAKTGIRFAEALGVTPDDFDFAHQTLSISKTWDYKSNKSD
HHHHHHCCCCCCCHHHEEEEEHHHCHHHHHHHCCCCCCHHHHHHHEEEEECCCCCCCCCC
FAPTKNNSSVRKVPLDWQTVIQFSQLTKKLPEDQPIFVQAKVYNDTVNHYLERLCKHASI
CCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHCCC
PVISVHGLRHTHASLLLYAGVSIASVARRLGHSNMTTTQQTYLHIIQELENQDNDKVMKH
CEEEECCCHHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
LASLI
HHHHC
>Mature Secondary Structure 
AQHVKFHQYFFQWMQLYKLDAVRPVTYRKYEMSHRQLVTLAPDLKMADLSRLTYQQLLN
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH
DYAETHERQTTMDFHRHLKGSLIDALEEGFIDRDPTRKAIIKGIKHRQHKTKYLHQYELQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ALLNELNLNNEVNWDYFILLIAKTGIRFAEALGVTPDDFDFAHQTLSISKTWDYKSNKSD
HHHHHHCCCCCCCHHHEEEEEHHHCHHHHHHHCCCCCCHHHHHHHEEEEECCCCCCCCCC
FAPTKNNSSVRKVPLDWQTVIQFSQLTKKLPEDQPIFVQAKVYNDTVNHYLERLCKHASI
CCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHCCC
PVISVHGLRHTHASLLLYAGVSIASVARRLGHSNMTTTQQTYLHIIQELENQDNDKVMKH
CEEEECCCHHHHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
LASLI
HHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA