| Definition | Lactobacillus plantarum WCFS1, complete genome. |
|---|---|
| Accession | NC_004567 |
| Length | 3,308,274 |
Click here to switch to the map view.
The map label for this gene is 28377755
Identifier: 28377755
GI number: 28377755
Start: 859862
End: 860407
Strand: Direct
Name: 28377755
Synonym: lp_0927
Alternate gene names: NA
Gene position: 859862-860407 (Clockwise)
Preceding gene: 28377754
Following gene: 28377756
Centisome position: 25.99
GC content: 45.97
Gene sequence:
>546_bases ATGAGCCGCTTAGCTAAGTTTACGGTGACGTTAGTCGGAATTGTATTGGTGTTATTAGCGGTTTTTGAACTGGGTCAGTT GTACCCAATCCCGTGGTTGACGTCCTGGTTAGCTGATCTGACGATTAACTACCCAATGGTTTGGAGTATCTTATTGATGG TCTTTGCCATTATTGCCGGAATCGTTGGTATCTTATTGGTAATTGTCGGCTTGTTTCGACCAGTTAAAGTCAGCACGTTG ACGTATGATGGCAAGGTTGGCCAGTTAACGATTCCGCAACGGGCTTTGGAACGTGATTTGCAGTACCGACTCGTTAATCA GTTGAATCTGATTGATCCTGAGGTTCACTTGAAATTACGGCGTCGTCGCCGGGTACGAGTAAAAATTGATGCGATGGTTA ATACTGACGCATCGTTAGAAACCACGGCCCAACAGGCGGCAACCTTGGCACAGGACTATTTGAAGAATCAATTGGGATTG ACGGTCGAACAACCGGTAGTGCAAGTTAAGCCAGCAAATCACCAGCGTAAGTTAACCGTGGTGTAA
Upstream 100 bases:
>100_bases CTGGTATGGCATTGGTACCCTCAATCTTAGGCGCTATTATCTTAGTATTAATCGTTTCTGCAATCTTCGGCATGCGTAAG AAACGTTAGGCGGTGATTAG
Downstream 100 bases:
>100_bases AGGAGGGTCCTGATGAGTAACGCACAGTATGGTTTTCTGATTGGACTGCTTTTAGGTATCGTCTGGGTATTAACCAGTTT TTCGGCAGTCTTATTAGTCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 181; Mature: 180
Protein sequence:
>181_residues MSRLAKFTVTLVGIVLVLLAVFELGQLYPIPWLTSWLADLTINYPMVWSILLMVFAIIAGIVGILLVIVGLFRPVKVSTL TYDGKVGQLTIPQRALERDLQYRLVNQLNLIDPEVHLKLRRRRRVRVKIDAMVNTDASLETTAQQAATLAQDYLKNQLGL TVEQPVVQVKPANHQRKLTVV
Sequences:
>Translated_181_residues MSRLAKFTVTLVGIVLVLLAVFELGQLYPIPWLTSWLADLTINYPMVWSILLMVFAIIAGIVGILLVIVGLFRPVKVSTL TYDGKVGQLTIPQRALERDLQYRLVNQLNLIDPEVHLKLRRRRRVRVKIDAMVNTDASLETTAQQAATLAQDYLKNQLGL TVEQPVVQVKPANHQRKLTVV >Mature_180_residues SRLAKFTVTLVGIVLVLLAVFELGQLYPIPWLTSWLADLTINYPMVWSILLMVFAIIAGIVGILLVIVGLFRPVKVSTLT YDGKVGQLTIPQRALERDLQYRLVNQLNLIDPEVHLKLRRRRRVRVKIDAMVNTDASLETTAQQAATLAQDYLKNQLGLT VEQPVVQVKPANHQRKLTVV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20393; Mature: 20262
Theoretical pI: Translated: 10.60; Mature: 10.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRLAKFTVTLVGIVLVLLAVFELGQLYPIPWLTSWLADLTINYPMVWSILLMVFAIIAG CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH IVGILLVIVGLFRPVKVSTLTYDGKVGQLTIPQRALERDLQYRLVNQLNLIDPEVHLKLR HHHHHHHHHHHCCCCEEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHH RRRRVRVKIDAMVNTDASLETTAQQAATLAQDYLKNQLGLTVEQPVVQVKPANHQRKLTV HCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCEEEECCCCCCEEEEE V C >Mature Secondary Structure SRLAKFTVTLVGIVLVLLAVFELGQLYPIPWLTSWLADLTINYPMVWSILLMVFAIIAG CHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH IVGILLVIVGLFRPVKVSTLTYDGKVGQLTIPQRALERDLQYRLVNQLNLIDPEVHLKLR HHHHHHHHHHHCCCCEEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHH RRRRVRVKIDAMVNTDASLETTAQQAATLAQDYLKNQLGLTVEQPVVQVKPANHQRKLTV HCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCEEEECCCCCCEEEEE V C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA