| Definition | Lactobacillus plantarum WCFS1, complete genome. |
|---|---|
| Accession | NC_004567 |
| Length | 3,308,274 |
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The map label for this gene is pts12BCA [H]
Identifier: 28377737
GI number: 28377737
Start: 833821
End: 835683
Strand: Direct
Name: pts12BCA [H]
Synonym: lp_0905
Alternate gene names: 28377737
Gene position: 833821-835683 (Clockwise)
Preceding gene: 28377736
Following gene: 28377738
Centisome position: 25.2
GC content: 39.88
Gene sequence:
>1863_bases ATGACATATAAAGAAATGAACGACCAGATTATTAATGGTGTCGGGGGTAAAAGTAATATTGAGTCAGTTGTACACTGTGC AACAAGGCTGAGATTCGTGCTGAAGGATGAGGCCAAGGCAGATGATGATTTGGTACGGTCGATTCCAGGAATTTTACAAG TTGTCAAAAAAGCGGGACAGTACCAATTAGTTATCGGAAATAATGTTGAGGATGTTTATAATGAACTTTCTGATATGTTA CAGCTGGATGAAAATGTAGATCATAATCAGTCTAAGGATAAGCGGAGTATTTTCGACAAAATAATTAGTACGATTACTGG CTCAATTGCACCTGCGATTCCATTGCTTGCTGGTGCTGGGATGGGGAAAGTATTGTTGCTCATTCTGACACTGTCTGGAT TATTAACTGAAAAAAGTCAAACTTATCAGATGTTAAATTTGATTTTTGATACTGGCTATTTCTTTATGCCAGCATTTATT GGATTTTCCGCTGCTAAGATTTTTAAGACAAACCAATTTCTAGGGGCATTTATGGGATTGGTCACTGTTAATCCAAATTG GGTTGCAATGGTAGCGGCTGGGAAGCCTGTTAGTTTCATAGGTGTTCCTATCCAATTGGTTTCTTATTCTTCAACCTTGA TTACAGCTATTTTATCCGTATGGTTAATGTCTTATATTGAAAAGTTTGTAAAGAAGATTACGCCAGGCATGATTAAAGTC TTTGCAGAGCCGATGCTTATCATGTTGATTACTGCACCACTGACTTTTATTGTTCTTGGACCAATTGCCAATTTGATTTC AATGGGAATTGCAAGTATAAGCATGTTCTTGTATGATAACGCCGGCTTTATCGCAATTCCGCTACTTGCTGCCGCATATC CATGGTTAGTTTCTATTGGTATTCATAAAGCGCTCAGTCCAATTAGTATCCAATTAGTTGCGACACAGGGATTTGATCCA ATAATTCGGGTTGTGGCTTTGTGTTCGAACATGTCACAAGCTGCCGCATCATTAGCAGTCGGTTTGAAAACCAAAAATAA GCAGTTGAGAGCCTTAGCACTTTCATCCACTGTGACAGCATATCTTGGTGGTATTACCGAACCAGCCATGTTTGGTGTGA ATCTGAAGTTAAAGAAGCCGATGTACGGTGCCATGATTGGTGGGGCAGTTGCCGGTTTGTTTGCCGGATTTATGAAAATG AAAGCATTTATTTATGTCACTCCTGGACTACTCAGCTTACCAATGTGGGTATCTAAGACAGAAAACTACGTCGTATTGGC AGTCGCTACCATTGTTATTGCTAGTGTGGCAACATTTATCGCAACTTGGTTGATTGGCTTCGAAGATCCTGTCAGCGAGG AAGTTATGAAACAAAAGCAGGCGCAGGCGAACAAAGTGGTGACAACTAAACATTCGATTAATAGCCCCGTTGTTGGGGAA GCTCGGATGTTGAATGAAGTTAATGATGAAACGTTTGCAAGTGGCGTTATGGGCAAAGGGATTGCTGTCATCCCAACTGA GGGTGTCGTGATTGCCCCCACGGATGGTGTTGCATCAGCTGTCTTTGATACCAGCCATGCGATTGGCCTTCATTTAGATA ATGATGCTGATTTGTTGATTCATGTGGGAATTGATACTGTTGAATTAAAAGGTCAATATTTTGAAACATTAGTAAAAAAG GGTGAGCGCTTTCACGCAGGTCAAGAGTTATTACGGTTTGATTTAGACAAGATAAAACAGGCTGGATATGATCCAACGGT TATGATTATTGTGTTAAATACAAAGGACTTTTTAGAGGTTCTACCAGTACCAGAATCGAACGAATCTGTAACCGCAGATA ATAATTTATTAATGTTAGCGTAA
Upstream 100 bases:
>100_bases TTGTTCAGAAGACCTATCACTATACGCTTAACAATGAAGATTTACTGTACATGACGATTCATATCGCAAGAATTGCGGAT GCAAATTAGGGGGCAGAATA
Downstream 100 bases:
>100_bases GTGAGGTAGGATTGATGGATGTTTACAAAACGAGTCCTAACTTTATGTGGGGCGTAGCAACTGCTGCTAATCAAGTAGAA GGCGCATGGAACGAGGACGG
Product: beta-glucosides PTS, EIIBCA
Products: NA
Alternate protein names: EIIBCA-Bgl; EII-Bgl; Beta-glucoside-specific phosphotransferase enzyme IIB component; PTS system beta-glucoside-specific EIIB component; Beta-glucoside permease IIC component; PTS system beta-glucoside-specific EIIC component; Beta-glucoside-specific phosphotransferase enzyme IIA component; PTS system beta-glucoside-specific EIIA component [H]
Number of amino acids: Translated: 620; Mature: 619
Protein sequence:
>620_residues MTYKEMNDQIINGVGGKSNIESVVHCATRLRFVLKDEAKADDDLVRSIPGILQVVKKAGQYQLVIGNNVEDVYNELSDML QLDENVDHNQSKDKRSIFDKIISTITGSIAPAIPLLAGAGMGKVLLLILTLSGLLTEKSQTYQMLNLIFDTGYFFMPAFI GFSAAKIFKTNQFLGAFMGLVTVNPNWVAMVAAGKPVSFIGVPIQLVSYSSTLITAILSVWLMSYIEKFVKKITPGMIKV FAEPMLIMLITAPLTFIVLGPIANLISMGIASISMFLYDNAGFIAIPLLAAAYPWLVSIGIHKALSPISIQLVATQGFDP IIRVVALCSNMSQAAASLAVGLKTKNKQLRALALSSTVTAYLGGITEPAMFGVNLKLKKPMYGAMIGGAVAGLFAGFMKM KAFIYVTPGLLSLPMWVSKTENYVVLAVATIVIASVATFIATWLIGFEDPVSEEVMKQKQAQANKVVTTKHSINSPVVGE ARMLNEVNDETFASGVMGKGIAVIPTEGVVIAPTDGVASAVFDTSHAIGLHLDNDADLLIHVGIDTVELKGQYFETLVKK GERFHAGQELLRFDLDKIKQAGYDPTVMIIVLNTKDFLEVLPVPESNESVTADNNLLMLA
Sequences:
>Translated_620_residues MTYKEMNDQIINGVGGKSNIESVVHCATRLRFVLKDEAKADDDLVRSIPGILQVVKKAGQYQLVIGNNVEDVYNELSDML QLDENVDHNQSKDKRSIFDKIISTITGSIAPAIPLLAGAGMGKVLLLILTLSGLLTEKSQTYQMLNLIFDTGYFFMPAFI GFSAAKIFKTNQFLGAFMGLVTVNPNWVAMVAAGKPVSFIGVPIQLVSYSSTLITAILSVWLMSYIEKFVKKITPGMIKV FAEPMLIMLITAPLTFIVLGPIANLISMGIASISMFLYDNAGFIAIPLLAAAYPWLVSIGIHKALSPISIQLVATQGFDP IIRVVALCSNMSQAAASLAVGLKTKNKQLRALALSSTVTAYLGGITEPAMFGVNLKLKKPMYGAMIGGAVAGLFAGFMKM KAFIYVTPGLLSLPMWVSKTENYVVLAVATIVIASVATFIATWLIGFEDPVSEEVMKQKQAQANKVVTTKHSINSPVVGE ARMLNEVNDETFASGVMGKGIAVIPTEGVVIAPTDGVASAVFDTSHAIGLHLDNDADLLIHVGIDTVELKGQYFETLVKK GERFHAGQELLRFDLDKIKQAGYDPTVMIIVLNTKDFLEVLPVPESNESVTADNNLLMLA >Mature_619_residues TYKEMNDQIINGVGGKSNIESVVHCATRLRFVLKDEAKADDDLVRSIPGILQVVKKAGQYQLVIGNNVEDVYNELSDMLQ LDENVDHNQSKDKRSIFDKIISTITGSIAPAIPLLAGAGMGKVLLLILTLSGLLTEKSQTYQMLNLIFDTGYFFMPAFIG FSAAKIFKTNQFLGAFMGLVTVNPNWVAMVAAGKPVSFIGVPIQLVSYSSTLITAILSVWLMSYIEKFVKKITPGMIKVF AEPMLIMLITAPLTFIVLGPIANLISMGIASISMFLYDNAGFIAIPLLAAAYPWLVSIGIHKALSPISIQLVATQGFDPI IRVVALCSNMSQAAASLAVGLKTKNKQLRALALSSTVTAYLGGITEPAMFGVNLKLKKPMYGAMIGGAVAGLFAGFMKMK AFIYVTPGLLSLPMWVSKTENYVVLAVATIVIASVATFIATWLIGFEDPVSEEVMKQKQAQANKVVTTKHSINSPVVGEA RMLNEVNDETFASGVMGKGIAVIPTEGVVIAPTDGVASAVFDTSHAIGLHLDNDADLLIHVGIDTVELKGQYFETLVKKG ERFHAGQELLRFDLDKIKQAGYDPTVMIIVLNTKDFLEVLPVPESNESVTADNNLLMLA
Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. This
COG id: COG1263
COG function: function code G; Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PTS EIIC type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1790159, Length=623, Percent_Identity=34.8314606741573, Blast_Score=362, Evalue=1e-101, Organism=Escherichia coli, GI48994906, Length=481, Percent_Identity=36.1746361746362, Blast_Score=298, Evalue=1e-81, Organism=Escherichia coli, GI2367362, Length=407, Percent_Identity=28.7469287469287, Blast_Score=170, Evalue=2e-43, Organism=Escherichia coli, GI1788769, Length=476, Percent_Identity=26.2605042016807, Blast_Score=115, Evalue=6e-27, Organism=Escherichia coli, GI1786894, Length=123, Percent_Identity=38.2113821138211, Blast_Score=100, Evalue=4e-22, Organism=Escherichia coli, GI1788757, Length=130, Percent_Identity=33.0769230769231, Blast_Score=90, Evalue=5e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011055 - InterPro: IPR018113 - InterPro: IPR001127 - InterPro: IPR001996 - InterPro: IPR003352 - InterPro: IPR013013 - InterPro: IPR011297 [H]
Pfam domain/function: PF00358 PTS_EIIA_1; PF00367 PTS_EIIB; PF02378 PTS_EIIC [H]
EC number: =2.7.1.69 [H]
Molecular weight: Translated: 66868; Mature: 66736
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: PS51093 PTS_EIIA_TYPE_1 ; PS01035 PTS_EIIB_TYPE_1_CYS ; PS51098 PTS_EIIB_TYPE_1 ; PS51103 PTS_EIIC_TYPE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTYKEMNDQIINGVGGKSNIESVVHCATRLRFVLKDEAKADDDLVRSIPGILQVVKKAGQ CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC YQLVIGNNVEDVYNELSDMLQLDENVDHNQSKDKRSIFDKIISTITGSIAPAIPLLAGAG EEEEECCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCC MGKVLLLILTLSGLLTEKSQTYQMLNLIFDTGYFFMPAFIGFSAAKIFKTNQFLGAFMGL HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHH VTVNPNWVAMVAAGKPVSFIGVPIQLVSYSSTLITAILSVWLMSYIEKFVKKITPGMIKV EEECCCEEEEEECCCCCEEECCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH FAEPMLIMLITAPLTFIVLGPIANLISMGIASISMFLYDNAGFIAIPLLAAAYPWLVSIG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHH IHKALSPISIQLVATQGFDPIIRVVALCSNMSQAAASLAVGLKTKNKQLRALALSSTVTA HHHCCCCEEEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH YLGGITEPAMFGVNLKLKKPMYGAMIGGAVAGLFAGFMKMKAFIYVTPGLLSLPMWVSKT HHCCCCCCHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHCCHHHCCC ENYVVLAVATIVIASVATFIATWLIGFEDPVSEEVMKQKQAQANKVVTTKHSINSPVVGE CCEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCH ARMLNEVNDETFASGVMGKGIAVIPTEGVVIAPTDGVASAVFDTSHAIGLHLDNDADLLI HHHHHHCCHHHHHHHHCCCCEEEEECCCEEEECCCCHHHHHHCCCCEEEEEECCCCCEEE HVGIDTVELKGQYFETLVKKGERFHAGQELLRFDLDKIKQAGYDPTVMIIVLNTKDFLEV EECCCEEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHC LPVPESNESVTADNNLLMLA CCCCCCCCCEECCCCEEEEC >Mature Secondary Structure TYKEMNDQIINGVGGKSNIESVVHCATRLRFVLKDEAKADDDLVRSIPGILQVVKKAGQ CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC YQLVIGNNVEDVYNELSDMLQLDENVDHNQSKDKRSIFDKIISTITGSIAPAIPLLAGAG EEEEECCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCC MGKVLLLILTLSGLLTEKSQTYQMLNLIFDTGYFFMPAFIGFSAAKIFKTNQFLGAFMGL HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHH VTVNPNWVAMVAAGKPVSFIGVPIQLVSYSSTLITAILSVWLMSYIEKFVKKITPGMIKV EEECCCEEEEEECCCCCEEECCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH FAEPMLIMLITAPLTFIVLGPIANLISMGIASISMFLYDNAGFIAIPLLAAAYPWLVSIG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHH IHKALSPISIQLVATQGFDPIIRVVALCSNMSQAAASLAVGLKTKNKQLRALALSSTVTA HHHCCCCEEEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH YLGGITEPAMFGVNLKLKKPMYGAMIGGAVAGLFAGFMKMKAFIYVTPGLLSLPMWVSKT HHCCCCCCHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHCCHHHCCC ENYVVLAVATIVIASVATFIATWLIGFEDPVSEEVMKQKQAQANKVVTTKHSINSPVVGE CCEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCH ARMLNEVNDETFASGVMGKGIAVIPTEGVVIAPTDGVASAVFDTSHAIGLHLDNDADLLI HHHHHHCCHHHHHHHHCCCCEEEEECCCEEEECCCCHHHHHHCCCCEEEEEECCCCCEEE HVGIDTVELKGQYFETLVKKGERFHAGQELLRFDLDKIKQAGYDPTVMIIVLNTKDFLEV EECCCEEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHC LPVPESNESVTADNNLLMLA CCCCCCCCCEECCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7883710; 7704263; 9384377; 8628237 [H]