Click here to switch to the map view.

The map label for this gene is hslR [C]

Identifier: 28377426

GI number: 28377426

Start: 492641

End: 492928

Strand: Direct

Name: hslR [C]

Synonym: lp_0541

Alternate gene names: 28377426

Gene position: 492641-492928 (Clockwise)

Preceding gene: 28377425

Following gene: 28377427

Centisome position: 14.89

GC content: 37.85

Gene sequence:

>288_bases
ATGAGTATGCGTTTAGATAAGTTTTTAAAGGTTTCACGAATCATCAAGCGGCGCTCTGTTGCTAAAGAAATCGCCGATAA
GGGGCGGATTCAAATTAACGGTAAGGTAGCGAAATCTTCCAGTAATGTTAGCGTTGATGATGAACTAATTATTAGTTTTG
GAAATAAGACATTAACAGTCAAAGTGACGCAGTTATTGGAAACAACTAAGAAAAATGATGCCGAGCTGATGTATGACATC
ATCAGCGAAGACTACAAAACGGATTATCGCCAACCATTTAGTGATTAG

Upstream 100 bases:

>100_bases
GGGCCGTCTATGCCCGATTATTCACGATTCGCGAGTGGTTAGTGTTGCCATATGGAAAGCGGCTAATTAAGGCCGTTGCA
AAAGGAAAGGAACATCATTC

Downstream 100 bases:

>100_bases
GTCGGTGTATCCGTTCATCGAAATGGTCGTAAACGTTGACTTAATCAGCATGATGTCGTTTACACCAGCCGATGAAGTTG
TTATAATTTAGGCAACCCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 95; Mature: 94

Protein sequence:

>95_residues
MSMRLDKFLKVSRIIKRRSVAKEIADKGRIQINGKVAKSSSNVSVDDELIISFGNKTLTVKVTQLLETTKKNDAELMYDI
ISEDYKTDYRQPFSD

Sequences:

>Translated_95_residues
MSMRLDKFLKVSRIIKRRSVAKEIADKGRIQINGKVAKSSSNVSVDDELIISFGNKTLTVKVTQLLETTKKNDAELMYDI
ISEDYKTDYRQPFSD
>Mature_94_residues
SMRLDKFLKVSRIIKRRSVAKEIADKGRIQINGKVAKSSSNVSVDDELIISFGNKTLTVKVTQLLETTKKNDAELMYDII
SEDYKTDYRQPFSD

Specific function: Involved In The Recycling Of Free 50s Ribosomal Subunits That Still Carry A Nascent Chain. Binds RNA More Specifically Than DNA. Binds With Very High Affinity To The Free 50s Ribosomal Subunit. Does Not Bind It When It Is Part Of The 70s Ribosome. [C]

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 10875; Mature: 10743

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMRLDKFLKVSRIIKRRSVAKEIADKGRIQINGKVAKSSSNVSVDDELIISFGNKTLTV
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEECCCCCCCCCCEEEEEECCCEEEE
KVTQLLETTKKNDAELMYDIISEDYKTDYRQPFSD
EHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SMRLDKFLKVSRIIKRRSVAKEIADKGRIQINGKVAKSSSNVSVDDELIISFGNKTLTV
CCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCEEECCCCCCCCCCEEEEEECCCEEEE
KVTQLLETTKKNDAELMYDIISEDYKTDYRQPFSD
EHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11463916 [H]