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The map label for this gene is yabM [H]

Identifier: 28377425

GI number: 28377425

Start: 491040

End: 492644

Strand: Direct

Name: yabM [H]

Synonym: lp_0540

Alternate gene names: 28377425

Gene position: 491040-492644 (Clockwise)

Preceding gene: 28377424

Following gene: 28377426

Centisome position: 14.84

GC content: 46.48

Gene sequence:

>1605_bases
ATGCCAAAGGATCACTTGAACACCGTGTTCAAAGGTGCGTTAATTTTATCGATATCATCATTAGTCGCTAAGATTTTAAG
CGCGGTATACCGGATTCCCTTACAGAACATGGTTGGTAATACGGGATTTTACGTTTATCAGCAGATTTATCCGCTGTACG
GCATTGGCATGACCTTTGCATTAAATGGATTTCCAAATTTTATTTCTAAGTTAGTGGCAGAACAGCCAGACGAAACGAGT
AAGTCGCTGATTGCACGGCGGGCGTTTCATATCTTATCCGGATTATCGTTGGTCGTCTTTTTCGGCTTGCAGCTTGGTGC
AACGTGGATTGCGGCCCACATGGGTGACGTTAATCTAGCACCAATCATTAGTGCCGTGGCTTGGATGTTTGTCTTTATGC
CATGGTTAGCAACCGGCCGTGGTTACTATCAAGGAAAATTTTTGATGGGACCGACCGCAGTGTCCCAACTGATCGAACAG
GTCGTACGGGTCGCAATTATCATCATGGCTGCATATTTCAGTGTCCGTCTCGGTTGGGATAATTATCGGATGGGAACGTG
GGCAATGAGTTCAGCGCCACTAGCTGCAATCTGTTCATCACTGATTTTTACTGCTTTTGGTCTACGCTATTTATTGGCGC
CCGCACCCGCACCGACCCACCCGTTACCTAGTTATCGCAAATTAACCAAAAGATTTGTAATTGAAGGTGGGACGCTGTGT
CTTGTCGCCGCTGTCGTTATCTTACTGCAATTAGTGGATTCATTTACGGTTATGCGGGGCTTGGTGCATCAAGGTCAGTT
ACCAGAAGTAGCCAAGGCACTAAAAGGGGTCTACGATCGTGGTCAACCTTTGGTTCAGTTAGGGTTGGTGGTGGCGACGG
CCTTTTCAGCAACGTTATTGCCTGCTTTGACGGATGCGTTAGCCAAGCGTCAACCGATTGAATTCAAGCGCCAGACACAG
GCGATGGTTCACGTTAGTTTAGCATTATCAATGGCAGCGACGGTCGGTCTAGTTGCGTTGATGCCACAAATCAATCGCTT
GTTATTTGGTTCATTAGAAGGAACAACGGCATTGCGAATCTATATTATTAGTATTTTATTTGCAGCGTTGATTACGACGT
ATACAAGTGTGTTACAGAGTTTGAACGAATATACGGCCATGATCATTGGCATCATTGCTGGATTAGCGACAAAAGTGCTG
GCTAATTACATCTTCGTGGTCCACTATGGCATCAACGGTGCCAGTGCGGTGACCGTATTGAGCTTGGCCGTGATGTTTGC
GGTCATGTGGTTAGGTTCGCCGGAAGACTTGCAGCAGGTGCTATTAGAGAGTGGTTATTTGATAAAATTGCTCGCATTAA
GTGCCGTAATGGGTATCGTGGTGATCCTTAGTTGTCATCAAATCACCGCCTTAGTAGGTCCGATACTAGCGAATACGCGT
GGAATGGCTGGAATTATAACGGTGATTGGGGTGCTAATCGGTGTGCTGGTGTTTGTTGCCGGGGCCGTCTATGCCCGATT
ATTCACGATTCGCGAGTGGTTAGTGTTGCCATATGGAAAGCGGCTAATTAAGGCCGTTGCAAAAGGAAAGGAACATCATT
CATGA

Upstream 100 bases:

>100_bases
GCAGGAATTATCGTCTGATGGGGCGTTGTCCTGGCTAGTCAGGGCGCGGCTCAAATGAATTAGTATGAGACACCGAGTTG
CTCGGTAGAAGGGATTTGTT

Downstream 100 bases:

>100_bases
GTATGCGTTTAGATAAGTTTTTAAAGGTTTCACGAATCATCAAGCGGCGCTCTGTTGCTAAAGAAATCGCCGATAAGGGG
CGGATTCAAATTAACGGTAA

Product: integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 534; Mature: 533

Protein sequence:

>534_residues
MPKDHLNTVFKGALILSISSLVAKILSAVYRIPLQNMVGNTGFYVYQQIYPLYGIGMTFALNGFPNFISKLVAEQPDETS
KSLIARRAFHILSGLSLVVFFGLQLGATWIAAHMGDVNLAPIISAVAWMFVFMPWLATGRGYYQGKFLMGPTAVSQLIEQ
VVRVAIIIMAAYFSVRLGWDNYRMGTWAMSSAPLAAICSSLIFTAFGLRYLLAPAPAPTHPLPSYRKLTKRFVIEGGTLC
LVAAVVILLQLVDSFTVMRGLVHQGQLPEVAKALKGVYDRGQPLVQLGLVVATAFSATLLPALTDALAKRQPIEFKRQTQ
AMVHVSLALSMAATVGLVALMPQINRLLFGSLEGTTALRIYIISILFAALITTYTSVLQSLNEYTAMIIGIIAGLATKVL
ANYIFVVHYGINGASAVTVLSLAVMFAVMWLGSPEDLQQVLLESGYLIKLLALSAVMGIVVILSCHQITALVGPILANTR
GMAGIITVIGVLIGVLVFVAGAVYARLFTIREWLVLPYGKRLIKAVAKGKEHHS

Sequences:

>Translated_534_residues
MPKDHLNTVFKGALILSISSLVAKILSAVYRIPLQNMVGNTGFYVYQQIYPLYGIGMTFALNGFPNFISKLVAEQPDETS
KSLIARRAFHILSGLSLVVFFGLQLGATWIAAHMGDVNLAPIISAVAWMFVFMPWLATGRGYYQGKFLMGPTAVSQLIEQ
VVRVAIIIMAAYFSVRLGWDNYRMGTWAMSSAPLAAICSSLIFTAFGLRYLLAPAPAPTHPLPSYRKLTKRFVIEGGTLC
LVAAVVILLQLVDSFTVMRGLVHQGQLPEVAKALKGVYDRGQPLVQLGLVVATAFSATLLPALTDALAKRQPIEFKRQTQ
AMVHVSLALSMAATVGLVALMPQINRLLFGSLEGTTALRIYIISILFAALITTYTSVLQSLNEYTAMIIGIIAGLATKVL
ANYIFVVHYGINGASAVTVLSLAVMFAVMWLGSPEDLQQVLLESGYLIKLLALSAVMGIVVILSCHQITALVGPILANTR
GMAGIITVIGVLIGVLVFVAGAVYARLFTIREWLVLPYGKRLIKAVAKGKEHHS
>Mature_533_residues
PKDHLNTVFKGALILSISSLVAKILSAVYRIPLQNMVGNTGFYVYQQIYPLYGIGMTFALNGFPNFISKLVAEQPDETSK
SLIARRAFHILSGLSLVVFFGLQLGATWIAAHMGDVNLAPIISAVAWMFVFMPWLATGRGYYQGKFLMGPTAVSQLIEQV
VRVAIIIMAAYFSVRLGWDNYRMGTWAMSSAPLAAICSSLIFTAFGLRYLLAPAPAPTHPLPSYRKLTKRFVIEGGTLCL
VAAVVILLQLVDSFTVMRGLVHQGQLPEVAKALKGVYDRGQPLVQLGLVVATAFSATLLPALTDALAKRQPIEFKRQTQA
MVHVSLALSMAATVGLVALMPQINRLLFGSLEGTTALRIYIISILFAALITTYTSVLQSLNEYTAMIIGIIAGLATKVLA
NYIFVVHYGINGASAVTVLSLAVMFAVMWLGSPEDLQQVLLESGYLIKLLALSAVMGIVVILSCHQITALVGPILANTRG
MAGIITVIGVLIGVLVFVAGAVYARLFTIREWLVLPYGKRLIKAVAKGKEHHS

Specific function: Unknown

COG id: COG2244

COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002797 [H]

Pfam domain/function: PF01943 Polysacc_synt [H]

EC number: NA

Molecular weight: Translated: 57732; Mature: 57601

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PKDHLNTVFKGALILSISSLVAKILSAVYRIPLQNMVGNTGFYVYQQIYPLYGIGMTFA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCHHHHE
LNGFPNFISKLVAEQPDETSKSLIARRAFHILSGLSLVVFFGLQLGATWIAAHMGDVNLA
ECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
PIISAVAWMFVFMPWLATGRGYYQGKFLMGPTAVSQLIEQVVRVAIIIMAAYFSVRLGWD
HHHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NYRMGTWAMSSAPLAAICSSLIFTAFGLRYLLAPAPAPTHPLPSYRKLTKRFVIEGGTLC
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHH
LVAAVVILLQLVDSFTVMRGLVHQGQLPEVAKALKGVYDRGQPLVQLGLVVATAFSATLL
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
PALTDALAKRQPIEFKRQTQAMVHVSLALSMAATVGLVALMPQINRLLFGSLEGTTALRI
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
YIISILFAALITTYTSVLQSLNEYTAMIIGIIAGLATKVLANYIFVVHYGINGASAVTVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHH
SLAVMFAVMWLGSPEDLQQVLLESGYLIKLLALSAVMGIVVILSCHQITALVGPILANTR
HHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GMAGIITVIGVLIGVLVFVAGAVYARLFTIREWLVLPYGKRLIKAVAKGKEHHS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]