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The map label for this gene is sdhB [H]

Identifier: 28377394

GI number: 28377394

Start: 452087

End: 452740

Strand: Direct

Name: sdhB [H]

Synonym: lp_0505

Alternate gene names: 28377394

Gene position: 452087-452740 (Clockwise)

Preceding gene: 28377393

Following gene: 28377395

Centisome position: 13.67

GC content: 44.19

Gene sequence:

>654_bases
ATGACGGTGAATTACAAGAGTGTTTTTGATATTATTGGCCCGATTATGATTGGACCTTCCAGTTCTCATACTGCGGGGGC
GTGTGCGATTGGTCGAGCAGCGAATAGCATTTTTCAGGAGAAACCGACAGATATTGTCATTCATTACTATGAATCATTTG
CGCAAACCCACAAGGGCCACGGAACGGACTATGCGATTATCAGTGGCATTCTTGGTTTTGATCCTGATGATAGCCGGGTT
CCATATGCCATTGGTTTGGCCCGAGATCAGGGGATAAATATTACCTTTATCGAAGAGCCTGGTGATAGCCCAATCAACCA
CCCGAACACTGCCATCATTGACTTAAAAAATGATGATAAGCAAGTGACGGTCGCTGGATGTTCAATCGGGGGTGGAACCA
TCGAAATTCGTGAAATCAAGATGGATGGTTTTGATGTTAAACCCAAAGGGCCACTTCCTATCTTGTTAGTTCAAGGTGGT
GAGAATGACCATCAGCACGTGACCAAACAGTTGGCTGATCTGACTAAAGTAAACGACCAGCAGCAGTACAAGACGGCTCG
GGGCAATTTATATGAATATGATTTGGATCGCCGCCTCAAACAGGATGAAATCAAAAAATTAGCGCAGGGACACGCAAATT
TAGTTTACTTATAA

Upstream 100 bases:

>100_bases
GTTTCGAAACGATGTACTGACGATGAATGCGCAAAGAAGCGCTAGTTGCCCGTACCAAAGCTTAATTTAACGTGATGATT
CAAATAGGAGGATGACTAAA

Downstream 100 bases:

>100_bases
TCAGGGAGGTCAGTTATGATGTACATGAGCGTAGCAGAACTGGTAACAGCGGCCAAGGAGACCAAGAAGCCGATCTACGA
ATTAATGATTGAACAAGAGA

Product: L-serine dehydratase, beta subunit

Products: NA

Alternate protein names: SDH; L-serine deaminase; L-SD [H]

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MTVNYKSVFDIIGPIMIGPSSSHTAGACAIGRAANSIFQEKPTDIVIHYYESFAQTHKGHGTDYAIISGILGFDPDDSRV
PYAIGLARDQGINITFIEEPGDSPINHPNTAIIDLKNDDKQVTVAGCSIGGGTIEIREIKMDGFDVKPKGPLPILLVQGG
ENDHQHVTKQLADLTKVNDQQQYKTARGNLYEYDLDRRLKQDEIKKLAQGHANLVYL

Sequences:

>Translated_217_residues
MTVNYKSVFDIIGPIMIGPSSSHTAGACAIGRAANSIFQEKPTDIVIHYYESFAQTHKGHGTDYAIISGILGFDPDDSRV
PYAIGLARDQGINITFIEEPGDSPINHPNTAIIDLKNDDKQVTVAGCSIGGGTIEIREIKMDGFDVKPKGPLPILLVQGG
ENDHQHVTKQLADLTKVNDQQQYKTARGNLYEYDLDRRLKQDEIKKLAQGHANLVYL
>Mature_216_residues
TVNYKSVFDIIGPIMIGPSSSHTAGACAIGRAANSIFQEKPTDIVIHYYESFAQTHKGHGTDYAIISGILGFDPDDSRVP
YAIGLARDQGINITFIEEPGDSPINHPNTAIIDLKNDDKQVTVAGCSIGGGTIEIREIKMDGFDVKPKGPLPILLVQGGE
NDHQHVTKQLADLTKVNDQQQYKTARGNLYEYDLDRRLKQDEIKKLAQGHANLVYL

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG1760

COG function: function code E; L-serine deaminase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ACT domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002912
- InterPro:   IPR004643
- InterPro:   IPR005131 [H]

Pfam domain/function: PF01842 ACT; PF03315 SDH_beta [H]

EC number: =4.3.1.17 [H]

Molecular weight: Translated: 23789; Mature: 23658

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVNYKSVFDIIGPIMIGPSSSHTAGACAIGRAANSIFQEKPTDIVIHYYESFAQTHKGH
CCCCHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHCCC
GTDYAIISGILGFDPDDSRVPYAIGLARDQGINITFIEEPGDSPINHPNTAIIDLKNDDK
CCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCC
QVTVAGCSIGGGTIEIREIKMDGFDVKPKGPLPILLVQGGENDHQHVTKQLADLTKVNDQ
EEEEEEEECCCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCH
QQYKTARGNLYEYDLDRRLKQDEIKKLAQGHANLVYL
HHHHHHCCCEEEECHHHHCCHHHHHHHHCCCCEEEEC
>Mature Secondary Structure 
TVNYKSVFDIIGPIMIGPSSSHTAGACAIGRAANSIFQEKPTDIVIHYYESFAQTHKGH
CCCHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHCCC
GTDYAIISGILGFDPDDSRVPYAIGLARDQGINITFIEEPGDSPINHPNTAIIDLKNDDK
CCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEECCCCC
QVTVAGCSIGGGTIEIREIKMDGFDVKPKGPLPILLVQGGENDHQHVTKQLADLTKVNDQ
EEEEEEEECCCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCH
QQYKTARGNLYEYDLDRRLKQDEIKKLAQGHANLVYL
HHHHHHCCCEEEECHHHHCCHHHHHHHHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377 [H]