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The map label for this gene is pepD2

Identifier: 28377254

GI number: 28377254

Start: 306430

End: 307842

Strand: Direct

Name: pepD2

Synonym: lp_0334

Alternate gene names: NA

Gene position: 306430-307842 (Clockwise)

Preceding gene: 28377250

Following gene: 28377255

Centisome position: 9.26

GC content: 43.6

Gene sequence:

>1413_bases
ATGTACGAACAAGCTTGTACCACAATTTTAGTTGGGAAGAAGGCGACCGTTGATGGTTCAACGATGATTGCCCGCAATGA
TGATACGTTTATGCCGATTACACCGCAAAAATTTATCGTCCATCCCGCCGTTCATGGTCGCAACGAAACGTTAACTTCTG
GGAAGAATGGCTTTACCGCACCACTTCCAGCGGATGGCTACCGTTACCAAGCTGTACCAAACATTGAAGTCGCTGAAAAG
GGTGTTTTTGAAGAAAATGGCTTTAACGAAAAAAACGTTGGTGTTTCTTCAACTGAAAGTGTTTATGGTAATGAACATAC
GCTGACTTTTGACCCATTCGTGCCTAATGGTCTCGCAGAAGATTCATTGCCAACCATGCTCACGCCGTTCATTGATTCTG
CTCGTGGTGGGGTTGAATACTTGGGCCAGTTGATCGCTAAATATGGTTCGCCAGAAGGTAACGGTGTTTTGTTCAATGAT
AAAGATGATGTGTGGTACATGGAGATCGTCACTGGTCACCACTGGGTTGCACAACGGATTCCGGATGATGCTTACGCGGT
GGCTGCCAACCAAGTTGCGATTCAATGGGTTGATTTTGATGATCCCGATAACTTTATGTGGTCTGATGGTATTCAAGAAT
TTGTTGCGGAACACCATTTGAACCCTGACAAGGAAGGTTTTAACTTCCGTCATATCTTCGGTACTGATAATGAAAAAGAC
CGGCATTATAATACTCCCCGGGTCTGGTACGGCCAACGTTATTTCAATCCAGAGATCGAACAAGATCCACAGTCGAGTGA
GCTACCGTTCATTTGTCACGCAGCCAAGAAGATTTCAGTTGCCGACGTTGAATTTGTACTGGGTTCTCATTATAACGAAA
CGAAGTACGATCCCTTCTTGAATACACCAGAAGCTAAAAAGTTTCGGCCAATTTCAATGAATCGGACGCAGAATTCACAC
GTTATGCAAGTGCGGAATGACGTACCAGCAGAACAAAGCGCGATTATGTGGATGACATTTGGGGTACCAGCTTTTGCGCC
ATACCTCCCATTCCATGCGAACGTTTCTGAAACTGATCCTAGTTTTGCGAACACACCACTAAAACATGATATGAATAGTG
CTTACTGGCTCTACCGGACACTATCAATGATTGTTGAATCACACTATGCTGATTTCGTTCAGGATGATATTGATTATTTG
AAAGAATGTCGAATCGAACTGGGTCAATTTGTGGCTGCGACCGATGAACAAGCGGCGAAGTTATCTGGTGACGAGTTAAC
GGCTTTCTTGACTGAACAAGATAAAGTAATGGTCGCAAAGATGCGTGATAAAGCCCAAGCTTTGATTGGTCAATTAGTCA
CCAAAGGTTTAACGCTCTCGAAACTAACCTATAATGTTGATATCAATCTTTAA

Upstream 100 bases:

>100_bases
CGTAAGAATTATCTGTCAGCGCTTTCGCAATGGTGGCTTTTTAAATTAGAGCGTGTATCATTAATAATGATCACGGAAAT
TAAAGACAGGAGATGCTTGC

Downstream 100 bases:

>100_bases
ACTTTCGTTATGACGGTATCAGCGTGTATAATTAGGTTATTAAGAGGACAAGGAGCTGATGGCAAATGGATGAAAATGTC
TTATTTAATCCTGGTGACGC

Product: dipeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MYEQACTTILVGKKATVDGSTMIARNDDTFMPITPQKFIVHPAVHGRNETLTSGKNGFTAPLPADGYRYQAVPNIEVAEK
GVFEENGFNEKNVGVSSTESVYGNEHTLTFDPFVPNGLAEDSLPTMLTPFIDSARGGVEYLGQLIAKYGSPEGNGVLFND
KDDVWYMEIVTGHHWVAQRIPDDAYAVAANQVAIQWVDFDDPDNFMWSDGIQEFVAEHHLNPDKEGFNFRHIFGTDNEKD
RHYNTPRVWYGQRYFNPEIEQDPQSSELPFICHAAKKISVADVEFVLGSHYNETKYDPFLNTPEAKKFRPISMNRTQNSH
VMQVRNDVPAEQSAIMWMTFGVPAFAPYLPFHANVSETDPSFANTPLKHDMNSAYWLYRTLSMIVESHYADFVQDDIDYL
KECRIELGQFVAATDEQAAKLSGDELTAFLTEQDKVMVAKMRDKAQALIGQLVTKGLTLSKLTYNVDINL

Sequences:

>Translated_470_residues
MYEQACTTILVGKKATVDGSTMIARNDDTFMPITPQKFIVHPAVHGRNETLTSGKNGFTAPLPADGYRYQAVPNIEVAEK
GVFEENGFNEKNVGVSSTESVYGNEHTLTFDPFVPNGLAEDSLPTMLTPFIDSARGGVEYLGQLIAKYGSPEGNGVLFND
KDDVWYMEIVTGHHWVAQRIPDDAYAVAANQVAIQWVDFDDPDNFMWSDGIQEFVAEHHLNPDKEGFNFRHIFGTDNEKD
RHYNTPRVWYGQRYFNPEIEQDPQSSELPFICHAAKKISVADVEFVLGSHYNETKYDPFLNTPEAKKFRPISMNRTQNSH
VMQVRNDVPAEQSAIMWMTFGVPAFAPYLPFHANVSETDPSFANTPLKHDMNSAYWLYRTLSMIVESHYADFVQDDIDYL
KECRIELGQFVAATDEQAAKLSGDELTAFLTEQDKVMVAKMRDKAQALIGQLVTKGLTLSKLTYNVDINL
>Mature_470_residues
MYEQACTTILVGKKATVDGSTMIARNDDTFMPITPQKFIVHPAVHGRNETLTSGKNGFTAPLPADGYRYQAVPNIEVAEK
GVFEENGFNEKNVGVSSTESVYGNEHTLTFDPFVPNGLAEDSLPTMLTPFIDSARGGVEYLGQLIAKYGSPEGNGVLFND
KDDVWYMEIVTGHHWVAQRIPDDAYAVAANQVAIQWVDFDDPDNFMWSDGIQEFVAEHHLNPDKEGFNFRHIFGTDNEKD
RHYNTPRVWYGQRYFNPEIEQDPQSSELPFICHAAKKISVADVEFVLGSHYNETKYDPFLNTPEAKKFRPISMNRTQNSH
VMQVRNDVPAEQSAIMWMTFGVPAFAPYLPFHANVSETDPSFANTPLKHDMNSAYWLYRTLSMIVESHYADFVQDDIDYL
KECRIELGQFVAATDEQAAKLSGDELTAFLTEQDKVMVAKMRDKAQALIGQLVTKGLTLSKLTYNVDINL

Specific function: Unknown

COG id: COG4690

COG function: function code E; Dipeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase C69 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005322 [H]

Pfam domain/function: PF03577 Peptidase_C69 [H]

EC number: NA

Molecular weight: Translated: 52975; Mature: 52975

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYEQACTTILVGKKATVDGSTMIARNDDTFMPITPQKFIVHPAVHGRNETLTSGKNGFTA
CCCHHCEEEEECCCEECCCCEEEEECCCCEECCCCCCEEEECCCCCCCCCCCCCCCCCCC
PLPADGYRYQAVPNIEVAEKGVFEENGFNEKNVGVSSTESVYGNEHTLTFDPFVPNGLAE
CCCCCCEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEECCCCCCCCCC
DSLPTMLTPFIDSARGGVEYLGQLIAKYGSPEGNGVLFNDKDDVWYMEIVTGHHWVAQRI
CCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEEECCCHHHHHHC
PDDAYAVAANQVAIQWVDFDDPDNFMWSDGIQEFVAEHHLNPDKEGFNFRHIFGTDNEKD
CCCHHEEEECEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC
RHYNTPRVWYGQRYFNPEIEQDPQSSELPFICHAAKKISVADVEFVLGSHYNETKYDPFL
CCCCCCCEEECCEECCCCCCCCCCCCCCCEEEECCCCCCCEEEHHHHCCCCCCCCCCCCC
NTPEAKKFRPISMNRTQNSHVMQVRNDVPAEQSAIMWMTFGVPAFAPYLPFHANVSETDP
CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCHHHHCCCCCCCCCCCCCC
SFANTPLKHDMNSAYWLYRTLSMIVESHYADFVQDDIDYLKECRIELGQFVAATDEQAAK
CCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
LSGDELTAFLTEQDKVMVAKMRDKAQALIGQLVTKGLTLSKLTYNVDINL
CCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECC
>Mature Secondary Structure
MYEQACTTILVGKKATVDGSTMIARNDDTFMPITPQKFIVHPAVHGRNETLTSGKNGFTA
CCCHHCEEEEECCCEECCCCEEEEECCCCEECCCCCCEEEECCCCCCCCCCCCCCCCCCC
PLPADGYRYQAVPNIEVAEKGVFEENGFNEKNVGVSSTESVYGNEHTLTFDPFVPNGLAE
CCCCCCEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEECCCCCCCCCC
DSLPTMLTPFIDSARGGVEYLGQLIAKYGSPEGNGVLFNDKDDVWYMEIVTGHHWVAQRI
CCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEEECCCHHHHHHC
PDDAYAVAANQVAIQWVDFDDPDNFMWSDGIQEFVAEHHLNPDKEGFNFRHIFGTDNEKD
CCCHHEEEECEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC
RHYNTPRVWYGQRYFNPEIEQDPQSSELPFICHAAKKISVADVEFVLGSHYNETKYDPFL
CCCCCCCEEECCEECCCCCCCCCCCCCCCEEEECCCCCCCEEEHHHHCCCCCCCCCCCCC
NTPEAKKFRPISMNRTQNSHVMQVRNDVPAEQSAIMWMTFGVPAFAPYLPFHANVSETDP
CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCHHHHCCCCCCCCCCCCCC
SFANTPLKHDMNSAYWLYRTLSMIVESHYADFVQDDIDYLKECRIELGQFVAATDEQAAK
CCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
LSGDELTAFLTEQDKVMVAKMRDKAQALIGQLVTKGLTLSKLTYNVDINL
CCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA