Click here to switch to the map view.

The map label for this gene is vdcB [H]

Identifier: 28377196

GI number: 28377196

Start: 247890

End: 248453

Strand: Direct

Name: vdcB [H]

Synonym: lp_0271

Alternate gene names: 28377196

Gene position: 247890-248453 (Clockwise)

Preceding gene: 28377195

Following gene: 28377197

Centisome position: 7.49

GC content: 45.39

Gene sequence:

>564_bases
ATGAAACGAATTGTTGTGGGAATCACGGGAGCGTCCGGTACGATTTACGCGGTCGACTTATTAGAAAAGTTACATCAGCG
GCCAGATGTTGAAGTTCATCTGGTAATGAGTGCGTGGGCTAAAAAAAACTTGGAGTTAGAGACTGATTACTCGCTCGCGC
AGCTGACGGCGCTCGCGGATGCTACTTATCGGGCTAATGACCAAGGCGCAGCGATTGCCAGCGGTTCGTTTTTGAATGAC
GGAATGGTCATTGTCCCAGCTAGTATGAAGACGGTAGCAGGGATTGCGTACGGCTTCGGTGATAATTTAATATCGCGGGC
TGCTGATGTCACGATTAAAGAACAACGTAAACTTGTGATTGTTCCACGTGAAACACCGTTAAGCGTGATTCATTTAGAAA
ATCTAACGAAGTTGGCAAAACTCGGTGCCCAAATTATTCCACCGATTCCCGCGTTTTATAATCATCCGCAATCCATTCAG
GATCTGGTCAATCATCAAACCATGAAAATTTTAGATGCGTTTCATATTCATAATGAAACTGATCGCCGTTGGGAGGGGGA
TTAA

Upstream 100 bases:

>100_bases
TAGTCTAAACTTGATTTGTTTGTAGTATTTTTGCAAGGTATCATAGACAGGTAAATGACTAATTTTATAATTGTAGAATT
TCCGAAACGAGGGTGTCAGG

Downstream 100 bases:

>100_bases
GTATGGCAACTTTTACGACTGAGCAGGCCGGGTATCAAATGCAAGCAATACTCCAAGTGATTGGATATGACTTGTTGATC
GTCGTTACCGGTGGGACCAA

Product: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MKRIVVGITGASGTIYAVDLLEKLHQRPDVEVHLVMSAWAKKNLELETDYSLAQLTALADATYRANDQGAAIASGSFLND
GMVIVPASMKTVAGIAYGFGDNLISRAADVTIKEQRKLVIVPRETPLSVIHLENLTKLAKLGAQIIPPIPAFYNHPQSIQ
DLVNHQTMKILDAFHIHNETDRRWEGD

Sequences:

>Translated_187_residues
MKRIVVGITGASGTIYAVDLLEKLHQRPDVEVHLVMSAWAKKNLELETDYSLAQLTALADATYRANDQGAAIASGSFLND
GMVIVPASMKTVAGIAYGFGDNLISRAADVTIKEQRKLVIVPRETPLSVIHLENLTKLAKLGAQIIPPIPAFYNHPQSIQ
DLVNHQTMKILDAFHIHNETDRRWEGD
>Mature_187_residues
MKRIVVGITGASGTIYAVDLLEKLHQRPDVEVHLVMSAWAKKNLELETDYSLAQLTALADATYRANDQGAAIASGSFLND
GMVIVPASMKTVAGIAYGFGDNLISRAADVTIKEQRKLVIVPRETPLSVIHLENLTKLAKLGAQIIPPIPAFYNHPQSIQ
DLVNHQTMKILDAFHIHNETDRRWEGD

Specific function: Unknown

COG id: COG0163

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polyprenyl p-hydroxybenzoate / phenylacrylic acid decarboxylases family [H]

Homologues:

Organism=Escherichia coli, GI1788650, Length=188, Percent_Identity=51.5957446808511, Blast_Score=200, Evalue=6e-53,
Organism=Saccharomyces cerevisiae, GI6320746, Length=185, Percent_Identity=51.8918918918919, Blast_Score=199, Evalue=2e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003382
- InterPro:   IPR004507 [H]

Pfam domain/function: PF02441 Flavoprotein [H]

EC number: 4.1.1.-

Molecular weight: Translated: 20565; Mature: 20565

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRIVVGITGASGTIYAVDLLEKLHQRPDVEVHLVMSAWAKKNLELETDYSLAQLTALAD
CCEEEEEEECCCCCEEHHHHHHHHHCCCCCEEEEEEEHHHHCCCCEECCCHHHHHHHHHH
ATYRANDQGAAIASGSFLNDGMVIVPASMKTVAGIAYGFGDNLISRAADVTIKEQRKLVI
CCCCCCCCCCEEECCCCCCCCEEEEECCHHHHHHHHHCCCHHHHHHHHCCEEECCCEEEE
VPRETPLSVIHLENLTKLAKLGAQIIPPIPAFYNHPQSIQDLVNHQTMKILDAFHIHNET
EECCCCEEEEEHHHHHHHHHCCHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
DRRWEGD
CCCCCCC
>Mature Secondary Structure
MKRIVVGITGASGTIYAVDLLEKLHQRPDVEVHLVMSAWAKKNLELETDYSLAQLTALAD
CCEEEEEEECCCCCEEHHHHHHHHHCCCCCEEEEEEEHHHHCCCCEECCCHHHHHHHHHH
ATYRANDQGAAIASGSFLNDGMVIVPASMKTVAGIAYGFGDNLISRAADVTIKEQRKLVI
CCCCCCCCCCEEECCCCCCCCEEEEECCHHHHHHHHHCCCHHHHHHHHCCEEECCCEEEE
VPRETPLSVIHLENLTKLAKLGAQIIPPIPAFYNHPQSIQDLVNHQTMKILDAFHIHNET
EECCCCEEEEEHHHHHHHHHCCHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
DRRWEGD
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Carbon-Carbon Lyases; Carboxy-Lyases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10986240 [H]