| Definition | Clostridium tetani E88 chromosome, complete genome. |
|---|---|
| Accession | NC_004557 |
| Length | 2,799,251 |
Click here to switch to the map view.
The map label for this gene is 28212197
Identifier: 28212197
GI number: 28212197
Start: 2775742
End: 2776161
Strand: Direct
Name: 28212197
Synonym: CTC02628
Alternate gene names: NA
Gene position: 2775742-2776161 (Clockwise)
Preceding gene: 28212170
Following gene: 28212206
Centisome position: 99.16
GC content: 24.05
Gene sequence:
>420_bases ATGATCAAGGAGTGGAAGCAAATGAAAGATTTAATTTTTGATAGTTTTCAAAGTGCTGTTGATGAATCCTTATTAAGACA TAAAAGTATTTTAGATATTATTTCAAAATTACAAGAATCTGAAAGTAGAATAAATAGGGCTGTAATAAAATCTGTAACAG CTTGTGGTTGTATAAAAATTGATGCACATAAACAAAAAATTCCTAATGAAATTAACAGTATAGATGATTTTACTACAGAA TTGAAAACTCATTTAGATGGTGAATTATGCCCTAATTGCAAAGAAATTATAGATATGGAAATAGGAAATAATATATTTTA TTTAACTTCTCTTTGTAATTCTTTGAATTTAAATTTATATGATATTTTTATAAAAGAATACAATGCAATAGATACACTAG GAAAATACAGATTAAGATAG
Upstream 100 bases:
>100_bases TAAGTTATTATTATCATAGAAACATAAATATTTAACATTTTTTTTAGATTTACTTAATATTTATAGATTTATCAATTAAA TATTTACTTATTTTAGAATT
Downstream 100 bases:
>100_bases TTAAAATATAGAGGAGTAAATACTGAAATGTTTTACTCCTCTATCTAGTAACTATATTCTTATCTATATTTGCTTGTTCC TTTAATCTTCTTAGTCCGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 139; Mature: 139
Protein sequence:
>139_residues MIKEWKQMKDLIFDSFQSAVDESLLRHKSILDIISKLQESESRINRAVIKSVTACGCIKIDAHKQKIPNEINSIDDFTTE LKTHLDGELCPNCKEIIDMEIGNNIFYLTSLCNSLNLNLYDIFIKEYNAIDTLGKYRLR
Sequences:
>Translated_139_residues MIKEWKQMKDLIFDSFQSAVDESLLRHKSILDIISKLQESESRINRAVIKSVTACGCIKIDAHKQKIPNEINSIDDFTTE LKTHLDGELCPNCKEIIDMEIGNNIFYLTSLCNSLNLNLYDIFIKEYNAIDTLGKYRLR >Mature_139_residues MIKEWKQMKDLIFDSFQSAVDESLLRHKSILDIISKLQESESRINRAVIKSVTACGCIKIDAHKQKIPNEINSIDDFTTE LKTHLDGELCPNCKEIIDMEIGNNIFYLTSLCNSLNLNLYDIFIKEYNAIDTLGKYRLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16059; Mature: 16059
Theoretical pI: Translated: 5.70; Mature: 5.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 3.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKEWKQMKDLIFDSFQSAVDESLLRHKSILDIISKLQESESRINRAVIKSVTACGCIKI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE DAHKQKIPNEINSIDDFTTELKTHLDGELCPNCKEIIDMEIGNNIFYLTSLCNSLNLNLY CCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCHHH DIFIKEYNAIDTLGKYRLR HHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MIKEWKQMKDLIFDSFQSAVDESLLRHKSILDIISKLQESESRINRAVIKSVTACGCIKI CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE DAHKQKIPNEINSIDDFTTELKTHLDGELCPNCKEIIDMEIGNNIFYLTSLCNSLNLNLY CCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCHHH DIFIKEYNAIDTLGKYRLR HHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA