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The map label for this gene is ydiF [H]

Identifier: 28212014

GI number: 28212014

Start: 2568421

End: 2570346

Strand: Direct

Name: ydiF [H]

Synonym: CTC02429

Alternate gene names: 28212014

Gene position: 2568421-2570346 (Clockwise)

Preceding gene: 28212001

Following gene: 28212015

Centisome position: 91.75

GC content: 28.4

Gene sequence:

>1926_bases
GTGAATAAACAAATGATTATTTTAAGTTGTAAAAATCTTACTAAAAGTTATGGTATAGATAGTATTTTACATAGTATATC
TTTTAACATAAAAGATACTGAGAAAGTAGGCTTGATAGGCCCTAATGGTTCTGGAAAATCTACATTATTAAAAATATTAG
CTAATAAATTAGATCATGATGGCGGAGAAATTTTTGTGGAAAAAAATAAAAAAATCGGCTATCTTCCTCAGCATTATTCC
ATAGAATCTTCCAAAACTATATATAACGAAATGTTATACGTATTTAAAAGTCTTATGGACTTAGAAGAGAAAATAGCTGA
TTTAGAAGAGAAAATGAATGAACCTTATGATTCTTCTAATGCAGAGTATCATGATAAAATCATTAAGAATTACACAACTG
CTGTTGAAACATACACGCTAAGAGGAGGATATACATACAAAGGCGAGATTAATAAAGTTTTAACTGGATTAGGATTTGAA
GAAAGCGATTTTGATACCCCTGTCAATATATTAAGTGGAGGTCAAAAAACTCGATTAGCTTTGTGTAAATTATTGCTTAT
AAATCCAGATATACTATTATTAGATGAACCTACAAACCATTTAGACTTAGATGCTATAGAATGGCTAGAAGAATACTTGA
AAAACCATAAAGGAACCATGATAATAATTTCACACGACAGATACTTTTTAGATTCTGTTACTAATAAAACTATGGAAATC
TCTAACAATCATCTTAAATCCTTTGATGGAAATTATACAAAATTTATAGAATTTAAAAAGAAAGATTATGAAGCTCAACT
AAAAGCTTACTCAATTCAGCAATCCGAAATAAAAAGACAAGAAGAAATTATAGAAAGATATAGATCTTTTAATAGAGAAA
AAAGTATACGGGCTGCAGAAAGTAGACAAAAGGCTTTAGATAAAATGGAGAAAATAGATAAGCCCACGGTAGATTCTAGT
AGTGCAAAAATTAAATTTAAAGCCTCTATTAAAAGTGGTAGTGATGTTCTTTATATAGAAGATTTATCCAAAAGCTTTGA
TGAGGTAGAACTTTTCCATAATATTAATTTGGATATAAAAAGAGGTGACAGATCTGCCCTAGTAGGTGAAAATGGTCGTG
GTAAAACTACTCTTTTTAAAATGATAATGGATGAAATACCCGCTGACAATGGTACTAAAGTATTGGGTAGGAATGTATTT
ATAGGATATTATGATCAAGAACAGTCTGATCTGAATCCTAATAAAACTATAATAGATGAGGTTTGGGACGATTTCCCTAA
TATGACAACTACAGAAGTAAGAAATGCCCTAGCTTCATTTTTATTTACTGGAGATGATGTATTCAAAGAAATATCTAAGC
TTAGCGGTGGAGAAAAATGTAGGATAAATCTTTTAAAATTAATGTTATCTAAGGCTAACTTTTTACTTCTAGATGAGCCT
ACAAATCATTTAGATATAGTATCTAGAGAAGCTTTAGAGGATGCTATAGTAAATTATGACGGAACCGTACTTGTAATTTC
TCACGATAGATATTTTTTAAATAAAGTTATTGATAAAATATATGAGTTAAAAAAAGATGAAATCAAAGAGTATTTAGGTA
ACTACAACTACTATATAGAAAAGAAGAAAAATCCTTCTAGATTTGAAGCTTTAGAAGAAAATGAAGGTATGACTAAAACT
CAAATTAAAATGGAGAAAAAAAAGAAGCGTGAGGCCGAAAAAGAACAAAAACAAATTAAAATGAAAGCTAAAAATATAGA
AGAACTAATTTCTTCTAAAGAAAATGAATTGTTAAAACTCCAAGAAGAGTTATGTTTAGAAGAGGTTTATTCTAATCCTG
ATAAAGCTCAGGATATAAACTTAAAAATATTAAATATAGAAAAATCTCTAGAAGAACTTTATAATGAATGGGAAAACTAC
TTATAA

Upstream 100 bases:

>100_bases
TTTTATCACAATATATAATTTCATACTATCTATATTATAACAAATTTAAAATACCTCTACAAAATTTTATTTTTACATAG
TAGAATATTATAGATAAGGG

Downstream 100 bases:

>100_bases
TTAACAGCGAATAATGAACAACTATGGATATCTTTTCTCCACTGGCATTCTAAAAAAATTTTAATTGTATGATTTATATA
TTAAGCAGTTCTTAACTAAA

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 641; Mature: 641

Protein sequence:

>641_residues
MNKQMIILSCKNLTKSYGIDSILHSISFNIKDTEKVGLIGPNGSGKSTLLKILANKLDHDGGEIFVEKNKKIGYLPQHYS
IESSKTIYNEMLYVFKSLMDLEEKIADLEEKMNEPYDSSNAEYHDKIIKNYTTAVETYTLRGGYTYKGEINKVLTGLGFE
ESDFDTPVNILSGGQKTRLALCKLLLINPDILLLDEPTNHLDLDAIEWLEEYLKNHKGTMIIISHDRYFLDSVTNKTMEI
SNNHLKSFDGNYTKFIEFKKKDYEAQLKAYSIQQSEIKRQEEIIERYRSFNREKSIRAAESRQKALDKMEKIDKPTVDSS
SAKIKFKASIKSGSDVLYIEDLSKSFDEVELFHNINLDIKRGDRSALVGENGRGKTTLFKMIMDEIPADNGTKVLGRNVF
IGYYDQEQSDLNPNKTIIDEVWDDFPNMTTTEVRNALASFLFTGDDVFKEISKLSGGEKCRINLLKLMLSKANFLLLDEP
TNHLDIVSREALEDAIVNYDGTVLVISHDRYFLNKVIDKIYELKKDEIKEYLGNYNYYIEKKKNPSRFEALEENEGMTKT
QIKMEKKKKREAEKEQKQIKMKAKNIEELISSKENELLKLQEELCLEEVYSNPDKAQDINLKILNIEKSLEELYNEWENY
L

Sequences:

>Translated_641_residues
MNKQMIILSCKNLTKSYGIDSILHSISFNIKDTEKVGLIGPNGSGKSTLLKILANKLDHDGGEIFVEKNKKIGYLPQHYS
IESSKTIYNEMLYVFKSLMDLEEKIADLEEKMNEPYDSSNAEYHDKIIKNYTTAVETYTLRGGYTYKGEINKVLTGLGFE
ESDFDTPVNILSGGQKTRLALCKLLLINPDILLLDEPTNHLDLDAIEWLEEYLKNHKGTMIIISHDRYFLDSVTNKTMEI
SNNHLKSFDGNYTKFIEFKKKDYEAQLKAYSIQQSEIKRQEEIIERYRSFNREKSIRAAESRQKALDKMEKIDKPTVDSS
SAKIKFKASIKSGSDVLYIEDLSKSFDEVELFHNINLDIKRGDRSALVGENGRGKTTLFKMIMDEIPADNGTKVLGRNVF
IGYYDQEQSDLNPNKTIIDEVWDDFPNMTTTEVRNALASFLFTGDDVFKEISKLSGGEKCRINLLKLMLSKANFLLLDEP
TNHLDIVSREALEDAIVNYDGTVLVISHDRYFLNKVIDKIYELKKDEIKEYLGNYNYYIEKKKNPSRFEALEENEGMTKT
QIKMEKKKKREAEKEQKQIKMKAKNIEELISSKENELLKLQEELCLEEVYSNPDKAQDINLKILNIEKSLEELYNEWENY
L
>Mature_641_residues
MNKQMIILSCKNLTKSYGIDSILHSISFNIKDTEKVGLIGPNGSGKSTLLKILANKLDHDGGEIFVEKNKKIGYLPQHYS
IESSKTIYNEMLYVFKSLMDLEEKIADLEEKMNEPYDSSNAEYHDKIIKNYTTAVETYTLRGGYTYKGEINKVLTGLGFE
ESDFDTPVNILSGGQKTRLALCKLLLINPDILLLDEPTNHLDLDAIEWLEEYLKNHKGTMIIISHDRYFLDSVTNKTMEI
SNNHLKSFDGNYTKFIEFKKKDYEAQLKAYSIQQSEIKRQEEIIERYRSFNREKSIRAAESRQKALDKMEKIDKPTVDSS
SAKIKFKASIKSGSDVLYIEDLSKSFDEVELFHNINLDIKRGDRSALVGENGRGKTTLFKMIMDEIPADNGTKVLGRNVF
IGYYDQEQSDLNPNKTIIDEVWDDFPNMTTTEVRNALASFLFTGDDVFKEISKLSGGEKCRINLLKLMLSKANFLLLDEP
TNHLDIVSREALEDAIVNYDGTVLVISHDRYFLNKVIDKIYELKKDEIKEYLGNYNYYIEKKKNPSRFEALEENEGMTKT
QIKMEKKKKREAEKEQKQIKMKAKNIEELISSKENELLKLQEELCLEEVYSNPDKAQDINLKILNIEKSLEELYNEWENY
L

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=537, Percent_Identity=29.608938547486, Blast_Score=238, Evalue=2e-62,
Organism=Homo sapiens, GI10947137, Length=539, Percent_Identity=30.2411873840445, Blast_Score=217, Evalue=4e-56,
Organism=Homo sapiens, GI27881506, Length=539, Percent_Identity=30.2411873840445, Blast_Score=216, Evalue=4e-56,
Organism=Homo sapiens, GI10947135, Length=521, Percent_Identity=27.447216890595, Blast_Score=190, Evalue=3e-48,
Organism=Homo sapiens, GI69354671, Length=521, Percent_Identity=27.447216890595, Blast_Score=190, Evalue=4e-48,
Organism=Escherichia coli, GI1789751, Length=624, Percent_Identity=31.25, Blast_Score=310, Evalue=2e-85,
Organism=Escherichia coli, GI1787041, Length=542, Percent_Identity=33.3948339483395, Blast_Score=286, Evalue=3e-78,
Organism=Escherichia coli, GI2367384, Length=537, Percent_Identity=32.7746741154562, Blast_Score=280, Evalue=2e-76,
Organism=Escherichia coli, GI1787182, Length=653, Percent_Identity=30.0153139356815, Blast_Score=271, Evalue=8e-74,
Organism=Escherichia coli, GI1788225, Length=246, Percent_Identity=27.6422764227642, Blast_Score=86, Evalue=9e-18,
Organism=Escherichia coli, GI1789593, Length=268, Percent_Identity=23.8805970149254, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1788165, Length=196, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787758, Length=219, Percent_Identity=25.5707762557078, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI87081709, Length=237, Percent_Identity=26.1603375527426, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1787164, Length=216, Percent_Identity=27.7777777777778, Blast_Score=64, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=542, Percent_Identity=30.0738007380074, Blast_Score=226, Evalue=3e-59,
Organism=Caenorhabditis elegans, GI17559834, Length=527, Percent_Identity=29.0322580645161, Blast_Score=221, Evalue=7e-58,
Organism=Caenorhabditis elegans, GI17555318, Length=530, Percent_Identity=27.5471698113208, Blast_Score=216, Evalue=3e-56,
Organism=Caenorhabditis elegans, GI25146777, Length=207, Percent_Identity=29.951690821256, Blast_Score=72, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17569081, Length=186, Percent_Identity=30.6451612903226, Blast_Score=68, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6321121, Length=557, Percent_Identity=31.2387791741472, Blast_Score=237, Evalue=3e-63,
Organism=Saccharomyces cerevisiae, GI6320874, Length=522, Percent_Identity=30.8429118773946, Blast_Score=223, Evalue=6e-59,
Organism=Saccharomyces cerevisiae, GI6323278, Length=392, Percent_Identity=27.0408163265306, Blast_Score=123, Evalue=7e-29,
Organism=Saccharomyces cerevisiae, GI6324314, Length=392, Percent_Identity=27.0408163265306, Blast_Score=119, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6325030, Length=393, Percent_Identity=26.972010178117, Blast_Score=111, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24666836, Length=547, Percent_Identity=31.0786106032907, Blast_Score=263, Evalue=3e-70,
Organism=Drosophila melanogaster, GI24642252, Length=539, Percent_Identity=29.3135435992579, Blast_Score=234, Evalue=1e-61,
Organism=Drosophila melanogaster, GI18859989, Length=539, Percent_Identity=29.3135435992579, Blast_Score=234, Evalue=1e-61,
Organism=Drosophila melanogaster, GI24641342, Length=544, Percent_Identity=28.3088235294118, Blast_Score=226, Evalue=5e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 74079; Mature: 74079

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKQMIILSCKNLTKSYGIDSILHSISFNIKDTEKVGLIGPNGSGKSTLLKILANKLDHD
CCCCEEEEEEHHHHHHCCHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
GGEIFVEKNKKIGYLPQHYSIESSKTIYNEMLYVFKSLMDLEEKIADLEEKMNEPYDSSN
CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AEYHDKIIKNYTTAVETYTLRGGYTYKGEINKVLTGLGFEESDFDTPVNILSGGQKTRLA
CHHHHHHHHHHHHHHHEEEECCCEEECCCHHHHHHCCCCCCCCCCCCHHHHCCCCHHHHH
LCKLLLINPDILLLDEPTNHLDLDAIEWLEEYLKNHKGTMIIISHDRYFLDSVTNKTMEI
HHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCEEE
SNNHLKSFDGNYTKFIEFKKKDYEAQLKAYSIQQSEIKRQEEIIERYRSFNREKSIRAAE
CCCHHHCCCCCEEEEEEEHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
SRQKALDKMEKIDKPTVDSSSAKIKFKASIKSGSDVLYIEDLSKSFDEVELFHNINLDIK
HHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCEEEEEHHHCCHHHHHHHHCCCEEEE
RGDRSALVGENGRGKTTLFKMIMDEIPADNGTKVLGRNVFIGYYDQEQSDLNPNKTIIDE
CCCCCEECCCCCCCHHHHHHHHHHHCCCCCCCEEECCCEEEEEECCCCCCCCCCHHHHHH
VWDDFPNMTTTEVRNALASFLFTGDDVFKEISKLSGGEKCRINLLKLMLSKANFLLLDEP
HHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEECC
TNHLDIVSREALEDAIVNYDGTVLVISHDRYFLNKVIDKIYELKKDEIKEYLGNYNYYIE
CCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCHHHHHHHHCCCCEEEE
KKKNPSRFEALEENEGMTKTQIKMEKKKKREAEKEQKQIKMKAKNIEELISSKENELLKL
ECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
QEELCLEEVYSNPDKAQDINLKILNIEKSLEELYNEWENYL
HHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNKQMIILSCKNLTKSYGIDSILHSISFNIKDTEKVGLIGPNGSGKSTLLKILANKLDHD
CCCCEEEEEEHHHHHHCCHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
GGEIFVEKNKKIGYLPQHYSIESSKTIYNEMLYVFKSLMDLEEKIADLEEKMNEPYDSSN
CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AEYHDKIIKNYTTAVETYTLRGGYTYKGEINKVLTGLGFEESDFDTPVNILSGGQKTRLA
CHHHHHHHHHHHHHHHEEEECCCEEECCCHHHHHHCCCCCCCCCCCCHHHHCCCCHHHHH
LCKLLLINPDILLLDEPTNHLDLDAIEWLEEYLKNHKGTMIIISHDRYFLDSVTNKTMEI
HHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCEEE
SNNHLKSFDGNYTKFIEFKKKDYEAQLKAYSIQQSEIKRQEEIIERYRSFNREKSIRAAE
CCCHHHCCCCCEEEEEEEHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
SRQKALDKMEKIDKPTVDSSSAKIKFKASIKSGSDVLYIEDLSKSFDEVELFHNINLDIK
HHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCEEEEEHHHCCHHHHHHHHCCCEEEE
RGDRSALVGENGRGKTTLFKMIMDEIPADNGTKVLGRNVFIGYYDQEQSDLNPNKTIIDE
CCCCCEECCCCCCCHHHHHHHHHHHCCCCCCCEEECCCEEEEEECCCCCCCCCCHHHHHH
VWDDFPNMTTTEVRNALASFLFTGDDVFKEISKLSGGEKCRINLLKLMLSKANFLLLDEP
HHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEECC
TNHLDIVSREALEDAIVNYDGTVLVISHDRYFLNKVIDKIYELKKDEIKEYLGNYNYYIE
CCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCHHHHHHHHCCCCEEEE
KKKNPSRFEALEENEGMTKTQIKMEKKKKREAEKEQKQIKMKAKNIEELISSKENELLKL
ECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
QEELCLEEVYSNPDKAQDINLKILNIEKSLEELYNEWENYL
HHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]