Click here to switch to the map view.

The map label for this gene is ydeD [H]

Identifier: 28211177

GI number: 28211177

Start: 1629413

End: 1630360

Strand: Direct

Name: ydeD [H]

Synonym: CTC01502

Alternate gene names: 28211177

Gene position: 1629413-1630360 (Clockwise)

Preceding gene: 28211163

Following gene: 28211180

Centisome position: 58.21

GC content: 25.11

Gene sequence:

>948_bases
ATGATTAAAAATGATAAAACTAAAGGTTTTATTTTAGTTATTCTAGCTGCATTACTTTGGGGATATTTGGGTATCCCTAC
CAAAAACTTATATGACTTTAATTTTGATTCATTCTCTGTGTGTTTTTTTAGGACATCCATAGCAGGTATTTTCTATTTTT
TATATTGCTTTAAAAAGGATGCTAACCTTTTGAAAATAGATAAAAAAGGTCTTTTATTTTTTATACTTTATGGCGCTATA
GGTTTCGCTACTACTTTTATTTGTTATAATGTGTCAGTAAATTATACTTCTATAGCCCTTGGTACTATGTTTATGTTTAC
CAGTCAAGTTTGGGTCGTAATTCTTTCTTATTTTATATTTAAAGAAAAATTTACTTCTAAAAAAATTATAGCTATATTCC
TAACTTTAGCTGGATGTTTTATGATGTGTAAAATGCATGATCCTAAAAATCTTAATTTAAATTTAAAAGGTGTTATATTA
GGACTTATTTCTGGTATTACCTTTGCATTACAAATCATTTTTGCTAAAATAAGCTCTAAAAAATATAGTCAAAACACATT
ACTTGCCTATTCTTTCATATTTGCATCATTGTTTTTGATTCCTTTTATGGATGCAAAAAATACTTTGAATATACTAAGTG
ACACCAACAATTTATATCCTATAATACAAAACATATTCGTTATAGGGTTTTTCACTACAGTTATAGCAAATGGTGCTTAT
CTTAAATCTGTAGAACATATAGAAGTTGGCATAGCATCCATAATAGCTACTTTAGAAATTCCAATATCAGCTATTATAGC
TTATTTTGTATTTCATCAAACTCTAGATATAATACAAATTATAGGTATGTTTTTAATTATTATATCTGTTATAATTTTAG
AACTTAAAATAAAAAATCTTAGTGAAGTATTTAATTTTTCATTATCTGAAAAAGAAACTTATAAGTAA

Upstream 100 bases:

>100_bases
TTATAATTAAACATGCAAATACATAGATTCTTAGCAAAGTTTACAAATAATTATTAAATTTCCCTGTAAAAATTTTCGAC
TTATAGGAGGTTGAGACTAA

Downstream 100 bases:

>100_bases
AACCAGATTTTTAATATCTGGTTTTACTTATATTTATAATTTTAAAATCTATTGAACTTTATTTATTATATAACTTAACC
ATACAGTATAAAATTTAGGT

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MIKNDKTKGFILVILAALLWGYLGIPTKNLYDFNFDSFSVCFFRTSIAGIFYFLYCFKKDANLLKIDKKGLLFFILYGAI
GFATTFICYNVSVNYTSIALGTMFMFTSQVWVVILSYFIFKEKFTSKKIIAIFLTLAGCFMMCKMHDPKNLNLNLKGVIL
GLISGITFALQIIFAKISSKKYSQNTLLAYSFIFASLFLIPFMDAKNTLNILSDTNNLYPIIQNIFVIGFFTTVIANGAY
LKSVEHIEVGIASIIATLEIPISAIIAYFVFHQTLDIIQIIGMFLIIISVIILELKIKNLSEVFNFSLSEKETYK

Sequences:

>Translated_315_residues
MIKNDKTKGFILVILAALLWGYLGIPTKNLYDFNFDSFSVCFFRTSIAGIFYFLYCFKKDANLLKIDKKGLLFFILYGAI
GFATTFICYNVSVNYTSIALGTMFMFTSQVWVVILSYFIFKEKFTSKKIIAIFLTLAGCFMMCKMHDPKNLNLNLKGVIL
GLISGITFALQIIFAKISSKKYSQNTLLAYSFIFASLFLIPFMDAKNTLNILSDTNNLYPIIQNIFVIGFFTTVIANGAY
LKSVEHIEVGIASIIATLEIPISAIIAYFVFHQTLDIIQIIGMFLIIISVIILELKIKNLSEVFNFSLSEKETYK
>Mature_315_residues
MIKNDKTKGFILVILAALLWGYLGIPTKNLYDFNFDSFSVCFFRTSIAGIFYFLYCFKKDANLLKIDKKGLLFFILYGAI
GFATTFICYNVSVNYTSIALGTMFMFTSQVWVVILSYFIFKEKFTSKKIIAIFLTLAGCFMMCKMHDPKNLNLNLKGVIL
GLISGITFALQIIFAKISSKKYSQNTLLAYSFIFASLFLIPFMDAKNTLNILSDTNNLYPIIQNIFVIGFFTTVIANGAY
LKSVEHIEVGIASIIATLEIPISAIIAYFVFHQTLDIIQIIGMFLIIISVIILELKIKNLSEVFNFSLSEKETYK

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 35670; Mature: 35670

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKNDKTKGFILVILAALLWGYLGIPTKNLYDFNFDSFSVCFFRTSIAGIFYFLYCFKKD
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHCC
ANLLKIDKKGLLFFILYGAIGFATTFICYNVSVNYTSIALGTMFMFTSQVWVVILSYFIF
CCEEEECCCCHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
KEKFTSKKIIAIFLTLAGCFMMCKMHDPKNLNLNLKGVILGLISGITFALQIIFAKISSK
HHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCC
KYSQNTLLAYSFIFASLFLIPFMDAKNTLNILSDTNNLYPIIQNIFVIGFFTTVIANGAY
CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHH
LKSVEHIEVGIASIIATLEIPISAIIAYFVFHQTLDIIQIIGMFLIIISVIILELKIKNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SEVFNFSLSEKETYK
HHHHCCCCCCCCCCC
>Mature Secondary Structure
MIKNDKTKGFILVILAALLWGYLGIPTKNLYDFNFDSFSVCFFRTSIAGIFYFLYCFKKD
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHCC
ANLLKIDKKGLLFFILYGAIGFATTFICYNVSVNYTSIALGTMFMFTSQVWVVILSYFIF
CCEEEECCCCHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
KEKFTSKKIIAIFLTLAGCFMMCKMHDPKNLNLNLKGVILGLISGITFALQIIFAKISSK
HHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCC
KYSQNTLLAYSFIFASLFLIPFMDAKNTLNILSDTNNLYPIIQNIFVIGFFTTVIANGAY
CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHH
LKSVEHIEVGIASIIATLEIPISAIIAYFVFHQTLDIIQIIGMFLIIISVIILELKIKNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SEVFNFSLSEKETYK
HHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]