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The map label for this gene is yfmS [H]

Identifier: 28211163

GI number: 28211163

Start: 1611072

End: 1611941

Strand: Direct

Name: yfmS [H]

Synonym: CTC01487

Alternate gene names: 28211163

Gene position: 1611072-1611941 (Clockwise)

Preceding gene: 28211154

Following gene: 28211177

Centisome position: 57.55

GC content: 31.15

Gene sequence:

>870_bases
TTGTTCTATAAAAAGGAGAGAATAGCTATGAATGATAACTTTAAAACAAATGAAGAAATTTTAGAGGCTCTCAAATCAGT
ACTACCTTACCTTAATAGTATAACCCCTGATGATATGGTAATAGGATTAACGGATTTAGAAAAATACATAGGCTATCATA
ATGCAAATGAATTTGAACTAGATTTATCAGAAGGAAAACCTATAAAAGGAATTAAGACCATTGAGGATTGCATAAACAAT
AAAAAAGATACTAGAGATACTATTCCAGCAGAGATTTATGGACGAGCACTTAAAACCTTTTTCACACCTATATACGGCGT
GAATAATGAGGTAATAGGAACCCTTAGTTCAGGAATAGATTTTGAAAATAATAAAAAACTTGTAGAAGATGTTTCTAGCT
TAGTAGAGATTATAAAACAAGTTACAGAAAGTATTAATGAAGTTGCAAAATCAGCAGGTATCTTGGCAGATTCCGGTCAA
AAATCTGTTGAAAAGGTAAAGGAATTAAATGATAAACAAAAGGATACAGCACAAATTCTACAACTTATACAAAACATTTC
AAAGCAAACAAATTTACTAGGTTTAAATGCAGCTATAGAGGCTTCTAGAGCAGGAGAAAATGGTCGTGGTTTTGCGGTAG
TGGCAACAGAAGTTAGAAAATTATCTGAACAATCTCAAAGGGCTGTAAAAAATATTGAAGCAATATTGGAAGATATGAAT
AACAGTGTAAGTGATATTCATAATACTATAGGAAATGTAGGTGCTATAAGCGAAGAACAAGCAGCAGCCACAGAAGAAAT
CTTGTCTAGTACAGAGGAAATTAATGACACTATTAATAATTTAAAATTATTTGTCCAAAGATACAAATAA

Upstream 100 bases:

>100_bases
TGATTTTTCAAAAGATTTAAATTCCATTGGGTGAATTATTCCTTTTAATATTTTCATTTATAGTAAGCATTATGCATTTT
ATGATATACTAAACTTAAAT

Downstream 100 bases:

>100_bases
TTTTAAAAGGGGAACCATGAAAATAATCATGATTCCCCTATTTTATGTTTATTTTAATATGCACTTACTTTTCTTTTTAT
TTACCCTTTGCTGCATTCTC

Product: methyl-accepting chemotaxis-like protein

Products: NA

Alternate protein names: Methyl-accepting chemotaxis protein [H]

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MFYKKERIAMNDNFKTNEEILEALKSVLPYLNSITPDDMVIGLTDLEKYIGYHNANEFELDLSEGKPIKGIKTIEDCINN
KKDTRDTIPAEIYGRALKTFFTPIYGVNNEVIGTLSSGIDFENNKKLVEDVSSLVEIIKQVTESINEVAKSAGILADSGQ
KSVEKVKELNDKQKDTAQILQLIQNISKQTNLLGLNAAIEASRAGENGRGFAVVATEVRKLSEQSQRAVKNIEAILEDMN
NSVSDIHNTIGNVGAISEEQAAATEEILSSTEEINDTINNLKLFVQRYK

Sequences:

>Translated_289_residues
MFYKKERIAMNDNFKTNEEILEALKSVLPYLNSITPDDMVIGLTDLEKYIGYHNANEFELDLSEGKPIKGIKTIEDCINN
KKDTRDTIPAEIYGRALKTFFTPIYGVNNEVIGTLSSGIDFENNKKLVEDVSSLVEIIKQVTESINEVAKSAGILADSGQ
KSVEKVKELNDKQKDTAQILQLIQNISKQTNLLGLNAAIEASRAGENGRGFAVVATEVRKLSEQSQRAVKNIEAILEDMN
NSVSDIHNTIGNVGAISEEQAAATEEILSSTEEINDTINNLKLFVQRYK
>Mature_289_residues
MFYKKERIAMNDNFKTNEEILEALKSVLPYLNSITPDDMVIGLTDLEKYIGYHNANEFELDLSEGKPIKGIKTIEDCINN
KKDTRDTIPAEIYGRALKTFFTPIYGVNNEVIGTLSSGIDFENNKKLVEDVSSLVEIIKQVTESINEVAKSAGILADSGQ
KSVEKVKELNDKQKDTAQILQLIQNISKQTNLLGLNAAIEASRAGENGRGFAVVATEVRKLSEQSQRAVKNIEAILEDMN
NSVSDIHNTIGNVGAISEEQAAATEEILSSTEEINDTINNLKLFVQRYK

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1788195, Length=155, Percent_Identity=36.7741935483871, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI2367378, Length=139, Percent_Identity=37.410071942446, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1788194, Length=155, Percent_Identity=32.9032258064516, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787690, Length=160, Percent_Identity=33.125, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789453, Length=140, Percent_Identity=33.5714285714286, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004089 [H]

Pfam domain/function: PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 32032; Mature: 32032

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFYKKERIAMNDNFKTNEEILEALKSVLPYLNSITPDDMVIGLTDLEKYIGYHNANEFEL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHEEEHHHHHHHHCCCCCCCEEE
DLSEGKPIKGIKTIEDCINNKKDTRDTIPAEIYGRALKTFFTPIYGVNNEVIGTLSSGID
ECCCCCCCCHHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCC
FENNKKLVEDVSSLVEIIKQVTESINEVAKSAGILADSGQKSVEKVKELNDKQKDTAQIL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHH
QLIQNISKQTNLLGLNAAIEASRAGENGRGFAVVATEVRKLSEQSQRAVKNIEAILEDMN
HHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NSVSDIHNTIGNVGAISEEQAAATEEILSSTEEINDTINNLKLFVQRYK
CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFYKKERIAMNDNFKTNEEILEALKSVLPYLNSITPDDMVIGLTDLEKYIGYHNANEFEL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHEEEHHHHHHHHCCCCCCCEEE
DLSEGKPIKGIKTIEDCINNKKDTRDTIPAEIYGRALKTFFTPIYGVNNEVIGTLSSGID
ECCCCCCCCHHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCC
FENNKKLVEDVSSLVEIIKQVTESINEVAKSAGILADSGQKSVEKVKELNDKQKDTAQIL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHH
QLIQNISKQTNLLGLNAAIEASRAGENGRGFAVVATEVRKLSEQSQRAVKNIEAILEDMN
HHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NSVSDIHNTIGNVGAISEEQAAATEEILSSTEEINDTINNLKLFVQRYK
CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]