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The map label for this gene is sigM [H]

Identifier: 28211110

GI number: 28211110

Start: 1547947

End: 1548507

Strand: Direct

Name: sigM [H]

Synonym: CTC01433

Alternate gene names: 28211110

Gene position: 1547947-1548507 (Clockwise)

Preceding gene: 28211109

Following gene: 28211111

Centisome position: 55.3

GC content: 23.35

Gene sequence:

>561_bases
ATGATACTAAATAGAAACAAAAATAAGGATAAATCAAAACGCTTTAACCAGTTAATCTCTATGATATGGCCAGATGTCGT
TAAATATATATTTTCTATTACCAGAAACGAAACATTAACAGAAGATGTCCTTCAAAATACTTTAATTATTGCTTACAAAA
ATTTTTCAAAATTAAAAGATATAGATAAGTTTAAATCATGGGTTTTTACCATAGCTAGAAGAGAATCTATTACTCTTATA
AAAAAATACAAAAGAGAAGTAACCATAAAGAATAATATAATTCAGATTATGCCAGATGAAAATTTTTCACTGCCTGAACA
GTGTATTTTAAAAGAAGAATTAATTAATTATGTTATAAAAGCTATTAATACATTAAGAAGTGAATATAGACAAGTTATAA
CATTGAGATATTATAATAATTTATCTTTTTATGAAATAGCAACTATATTAAATATTAAAGAAAGTACAGTGCGGGTGTGG
CATATGAGAGCTAAAAAAGAAATTTATAATTGGATAAATTATAATTACTTTCAAATAAACACTAATAAAATGCACACTTA
A

Upstream 100 bases:

>100_bases
AAGAAGTATGGTTAGTTTTATTTTTTTTAGTGACATGTTATACTTAGTTTACAATGGTAAAATTTATAAAACTAATAAGT
ATTTGTAAAGGAGTTTTTAA

Downstream 100 bases:

>100_bases
AAGGTATAGTCTATAAAAAAGATACCATAAATAAATTATTTAAATGCATATTCTTCTTTTAGAGTTTTATAATATAAGGG
TAAACTTTAGAAAAACATTT

Product: putative RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MILNRNKNKDKSKRFNQLISMIWPDVVKYIFSITRNETLTEDVLQNTLIIAYKNFSKLKDIDKFKSWVFTIARRESITLI
KKYKREVTIKNNIIQIMPDENFSLPEQCILKEELINYVIKAINTLRSEYRQVITLRYYNNLSFYEIATILNIKESTVRVW
HMRAKKEIYNWINYNYFQINTNKMHT

Sequences:

>Translated_186_residues
MILNRNKNKDKSKRFNQLISMIWPDVVKYIFSITRNETLTEDVLQNTLIIAYKNFSKLKDIDKFKSWVFTIARRESITLI
KKYKREVTIKNNIIQIMPDENFSLPEQCILKEELINYVIKAINTLRSEYRQVITLRYYNNLSFYEIATILNIKESTVRVW
HMRAKKEIYNWINYNYFQINTNKMHT
>Mature_186_residues
MILNRNKNKDKSKRFNQLISMIWPDVVKYIFSITRNETLTEDVLQNTLIIAYKNFSKLKDIDKFKSWVFTIARRESITLI
KKYKREVTIKNNIIQIMPDENFSLPEQCILKEELINYVIKAINTLRSEYRQVITLRYYNNLSFYEIATILNIKESTVRVW
HMRAKKEIYNWINYNYFQINTNKMHT

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor may be involved in the maintenance of membrane and cell wall integrity in response to salt, acid and e

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014296
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22592; Mature: 22592

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILNRNKNKDKSKRFNQLISMIWPDVVKYIFSITRNETLTEDVLQNTLIIAYKNFSKLKD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCEEEEEECCHHHHHH
IDKFKSWVFTIARRESITLIKKYKREVTIKNNIIQIMPDENFSLPEQCILKEELINYVIK
HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
AINTLRSEYRQVITLRYYNNLSFYEIATILNIKESTVRVWHMRAKKEIYNWINYNYFQIN
HHHHHHHHHHHHHHHEEECCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCEEEEEE
TNKMHT
CCCCCC
>Mature Secondary Structure
MILNRNKNKDKSKRFNQLISMIWPDVVKYIFSITRNETLTEDVLQNTLIIAYKNFSKLKD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCEEEEEECCHHHHHH
IDKFKSWVFTIARRESITLIKKYKREVTIKNNIIQIMPDENFSLPEQCILKEELINYVIK
HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
AINTLRSEYRQVITLRYYNNLSFYEIATILNIKESTVRVWHMRAKKEIYNWINYNYFQIN
HHHHHHHHHHHHHHHEEECCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCEEEEEE
TNKMHT
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377; 12775685; 10216858 [H]