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The map label for this gene is ydeE [H]

Identifier: 28211109

GI number: 28211109

Start: 1546799

End: 1547686

Strand: Direct

Name: ydeE [H]

Synonym: CTC01432

Alternate gene names: 28211109

Gene position: 1546799-1547686 (Clockwise)

Preceding gene: 28211108

Following gene: 28211110

Centisome position: 55.26

GC content: 32.21

Gene sequence:

>888_bases
TTGAATTATAGGAAAGATATTGAAAAGTGTATTAAATTCATTGAAGACCATATCAAAGAAAATATTACTATTAAAGAAAT
TGCTAATGAATCTGGGTACTCTCTTTATCATTTTTGTAGAGTTTTTAGTTTATGCAAGGGTATGTCCCTTATGGAATACA
TTAGAGATCGCAGATTGTCTTTAGCAGCTACAGAATTATTAAAAGGCAGAAAAGTTATTGATATTGCCTTAGACTATGGA
TTTGAAACACCCAGTGGCTTTACCAAGGCTTTTCGTAAAATTTTTGGTTATAGCCCCACACAGTATATGGCACGAATGGC
TGGATATGCTGATACAAAAAAAGCATTTAAAATTGGAGGTTATATTATGAATCCTGTTATTATAAATAGACCTGCGTTTA
AGGTTGCAGGTTATGGAATTAAAACCAATATTACTGATGGCACATATACAAAGGATATTGCGTCCTTCTGGAGCAATTAT
AATGGTGAAAATTTAGAAAGCAAAATGTACAAAATTTTAAATCCACCTAAGCATGGTGAAGTGGGATTGTGTGTTCCATT
ATCTGAAGATGGAAATGCAATATATCTTTTAGGTGTAATTGTTGACGACTTTTCAAAGGTAGAGGAAAATATGCTAACAG
TAGAAGTTCCAGCAGCAGAGTACGCAGTTTTTACAACCACTCCTGTTGATACTACAAATGACAAAGAACAAAAGGAGTTT
GCAAAGATTATTAAAGGTACATGGAAATATATTTTTGAAGATTGGTTTAAAGACAGTGGATATGTTTATGATGAAAATAA
ACTTGATTTTGAATTTTACGATGAACGCTGTCATTACAGACAAGACACTGTCATGGAGATTTATGTTCCTGTTAAAAAAG
TAAAATGA

Upstream 100 bases:

>100_bases
TGAAAAATAATTAATATTTAGCAAAACAGGCACAGTTTCGCCTCAAAGTTGTTGTTATAATAAAATTACCATACTAAGAA
AAATCAGGTGGAGGTAAACA

Downstream 100 bases:

>100_bases
TGATATCTTATGAAATTGGGGAGGATCACTTTTTAAAGTTTTCCTCCCTTTCTTAATGTTCTAAGGCAGCTTCTACAACT
CTTGTAAGTTCAATAAAGGC

Product: transcriptional regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MNYRKDIEKCIKFIEDHIKENITIKEIANESGYSLYHFCRVFSLCKGMSLMEYIRDRRLSLAATELLKGRKVIDIALDYG
FETPSGFTKAFRKIFGYSPTQYMARMAGYADTKKAFKIGGYIMNPVIINRPAFKVAGYGIKTNITDGTYTKDIASFWSNY
NGENLESKMYKILNPPKHGEVGLCVPLSEDGNAIYLLGVIVDDFSKVEENMLTVEVPAAEYAVFTTTPVDTTNDKEQKEF
AKIIKGTWKYIFEDWFKDSGYVYDENKLDFEFYDERCHYRQDTVMEIYVPVKKVK

Sequences:

>Translated_295_residues
MNYRKDIEKCIKFIEDHIKENITIKEIANESGYSLYHFCRVFSLCKGMSLMEYIRDRRLSLAATELLKGRKVIDIALDYG
FETPSGFTKAFRKIFGYSPTQYMARMAGYADTKKAFKIGGYIMNPVIINRPAFKVAGYGIKTNITDGTYTKDIASFWSNY
NGENLESKMYKILNPPKHGEVGLCVPLSEDGNAIYLLGVIVDDFSKVEENMLTVEVPAAEYAVFTTTPVDTTNDKEQKEF
AKIIKGTWKYIFEDWFKDSGYVYDENKLDFEFYDERCHYRQDTVMEIYVPVKKVK
>Mature_295_residues
MNYRKDIEKCIKFIEDHIKENITIKEIANESGYSLYHFCRVFSLCKGMSLMEYIRDRRLSLAATELLKGRKVIDIALDYG
FETPSGFTKAFRKIFGYSPTQYMARMAGYADTKKAFKIGGYIMNPVIINRPAFKVAGYGIKTNITDGTYTKDIASFWSNY
NGENLESKMYKILNPPKHGEVGLCVPLSEDGNAIYLLGVIVDDFSKVEENMLTVEVPAAEYAVFTTTPVDTTNDKEQKEF
AKIIKGTWKYIFEDWFKDSGYVYDENKLDFEFYDERCHYRQDTVMEIYVPVKKVK

Specific function: Transcriptional Activator Of The Superoxide Response Regulon Of E.Coli That Includes At Least 10 Genes Such As Soda, Nfo, Zwf And Micf. Binds The DNA Sequence 5'-Gcacn(7)Caa-3'. It Also Facilitates The Subsequent Binding Of RNA Polymerase To The Micf And

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790497, Length=107, Percent_Identity=37.3831775700935, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1790857, Length=97, Percent_Identity=37.1134020618557, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87081928, Length=104, Percent_Identity=31.7307692307692, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34091; Mature: 34091

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYRKDIEKCIKFIEDHIKENITIKEIANESGYSLYHFCRVFSLCKGMSLMEYIRDRRLS
CCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
LAATELLKGRKVIDIALDYGFETPSGFTKAFRKIFGYSPTQYMARMAGYADTKKAFKIGG
HHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCC
YIMNPVIINRPAFKVAGYGIKTNITDGTYTKDIASFWSNYNGENLESKMYKILNPPKHGE
EEECCEEECCCCCEEECCCEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCC
VGLCVPLSEDGNAIYLLGVIVDDFSKVEENMLTVEVPAAEYAVFTTTPVDTTNDKEQKEF
EEEEEEECCCCCEEEEEEEHHHHHHHHHHCEEEEEECCCCEEEEEECCCCCCCCHHHHHH
AKIIKGTWKYIFEDWFKDSGYVYDENKLDFEFYDERCHYRQDTVMEIYVPVKKVK
HHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCEEEEEEEHHCCC
>Mature Secondary Structure
MNYRKDIEKCIKFIEDHIKENITIKEIANESGYSLYHFCRVFSLCKGMSLMEYIRDRRLS
CCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
LAATELLKGRKVIDIALDYGFETPSGFTKAFRKIFGYSPTQYMARMAGYADTKKAFKIGG
HHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCC
YIMNPVIINRPAFKVAGYGIKTNITDGTYTKDIASFWSNYNGENLESKMYKILNPPKHGE
EEECCEEECCCCCEEECCCEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCC
VGLCVPLSEDGNAIYLLGVIVDDFSKVEENMLTVEVPAAEYAVFTTTPVDTTNDKEQKEF
EEEEEEECCCCCEEEEEEEHHHHHHHHHHCEEEEEECCCCEEEEEECCCCCCCCHHHHHH
AKIIKGTWKYIFEDWFKDSGYVYDENKLDFEFYDERCHYRQDTVMEIYVPVKKVK
HHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCCCEEEEEEEHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]