| Definition | Clostridium tetani E88 chromosome, complete genome. |
|---|---|
| Accession | NC_004557 |
| Length | 2,799,251 |
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The map label for this gene is oppD [H]
Identifier: 28211081
GI number: 28211081
Start: 1515429
End: 1516370
Strand: Direct
Name: oppD [H]
Synonym: CTC01403
Alternate gene names: 28211081
Gene position: 1515429-1516370 (Clockwise)
Preceding gene: 28211080
Following gene: 28211082
Centisome position: 54.14
GC content: 29.72
Gene sequence:
>942_bases ATGAATATGGATATAGAAATAAAAAATTTAAAAGTAGAATTTCCTACTAAAGAAGGAAATGTACGGGCTGTAGATAATAT CTCTCTTAAAATAAATATGGGAAAAGTATTAGGTCTCATTGGTGAGACAGGTAGTGGAAAGTCTGTACTAGGATTATCTA TATTAGGTTTATTATCTAATAGTGCAATTATTTCTGGGGAAATATTGTATAAAAACACCAACTTATTATCATTAAATATA AATGATATGAGAAATTTAAGAGGAGTTGATATTGCATTAATTCCTCAAAATCCTAGTACCGCTTTAAACCCAATAATGAA GGTTGGAAAACAAATATGTGAAGGAGAAAATAATAATAAAAAGGATTGTAAAATTAAAGTAGTTAATTTGTTAAAAGAAT TATTTCTCTCTAATCCTTCAAAGGTTGCAGACTCTTACCCATTTGAACTTAGCGGTGGTATGAAACAAAGAGCTTTGGCT TCTATGGGTATATATTGTAATCCCAATTGGATTATTGCAGATGAACCTACAAAAGGACTTGATGCTATAGTTCGAGGTCA AGTCTATGAAACTTTACATAAAATAACTAATAGTCGTAATTGTGGCATGCTTTTAATTACTCATGATTTAATGCTTTCTA AGAATTTATGCGATAATATAGCAGTTATGTATGGCGGTGACATAGTTGAAATTGGAAAAGCTTATGATGTTTTAGAAAAC TCTAAGCATCCTTATACAAAGGGACTTGTATTTTCACAACCTCATAAAGGATTACAACCTATGAAGGGTTCTTCTCCTAG TCTTATTAACCCTCCTATAGGTTGTAAGTTTTCTCAAAGATGTTCTAATAAAATACCTATTTGTTCATTAAAAAAACCTG ATTTTTATACACTAGAAAATGGCTCTAAAGTGAGGTGTTTTTTGTTTGATAAAAGTAAATAA
Upstream 100 bases:
>100_bases CTTTTAAGTTTAAGCATTAATATAATTGGAGATTTTATAAGAGATTACTTGGACAAAGGAAAAGATATTTATAATCAATA TATATAAATGAGGTAATTTT
Downstream 100 bases:
>100_bases CCTAACTAAAAGCTTTAGCAGAAATGGTTTTATAAAGAATAAGTCCTTAGTTTTAGATAATGTATCTTTACATATAAAAA AAGGAATTACTCTTGGCCTC
Product: oligopeptide transport ATP-binding protein oppD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 313; Mature: 313
Protein sequence:
>313_residues MNMDIEIKNLKVEFPTKEGNVRAVDNISLKINMGKVLGLIGETGSGKSVLGLSILGLLSNSAIISGEILYKNTNLLSLNI NDMRNLRGVDIALIPQNPSTALNPIMKVGKQICEGENNNKKDCKIKVVNLLKELFLSNPSKVADSYPFELSGGMKQRALA SMGIYCNPNWIIADEPTKGLDAIVRGQVYETLHKITNSRNCGMLLITHDLMLSKNLCDNIAVMYGGDIVEIGKAYDVLEN SKHPYTKGLVFSQPHKGLQPMKGSSPSLINPPIGCKFSQRCSNKIPICSLKKPDFYTLENGSKVRCFLFDKSK
Sequences:
>Translated_313_residues MNMDIEIKNLKVEFPTKEGNVRAVDNISLKINMGKVLGLIGETGSGKSVLGLSILGLLSNSAIISGEILYKNTNLLSLNI NDMRNLRGVDIALIPQNPSTALNPIMKVGKQICEGENNNKKDCKIKVVNLLKELFLSNPSKVADSYPFELSGGMKQRALA SMGIYCNPNWIIADEPTKGLDAIVRGQVYETLHKITNSRNCGMLLITHDLMLSKNLCDNIAVMYGGDIVEIGKAYDVLEN SKHPYTKGLVFSQPHKGLQPMKGSSPSLINPPIGCKFSQRCSNKIPICSLKKPDFYTLENGSKVRCFLFDKSK >Mature_313_residues MNMDIEIKNLKVEFPTKEGNVRAVDNISLKINMGKVLGLIGETGSGKSVLGLSILGLLSNSAIISGEILYKNTNLLSLNI NDMRNLRGVDIALIPQNPSTALNPIMKVGKQICEGENNNKKDCKIKVVNLLKELFLSNPSKVADSYPFELSGGMKQRALA SMGIYCNPNWIIADEPTKGLDAIVRGQVYETLHKITNSRNCGMLLITHDLMLSKNLCDNIAVMYGGDIVEIGKAYDVLEN SKHPYTKGLVFSQPHKGLQPMKGSSPSLINPPIGCKFSQRCSNKIPICSLKKPDFYTLENGSKVRCFLFDKSK
Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system. Expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI6005701, Length=220, Percent_Identity=26.8181818181818, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI9961250, Length=241, Percent_Identity=26.9709543568465, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI4505771, Length=241, Percent_Identity=26.9709543568465, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI9961252, Length=241, Percent_Identity=26.9709543568465, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI255708477, Length=297, Percent_Identity=23.9057239057239, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI153792144, Length=194, Percent_Identity=30.4123711340206, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI27436953, Length=233, Percent_Identity=27.0386266094421, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI27477115, Length=287, Percent_Identity=22.9965156794425, Blast_Score=65, Evalue=9e-11, Organism=Escherichia coli, GI1787759, Length=288, Percent_Identity=37.1527777777778, Blast_Score=216, Evalue=2e-57, Organism=Escherichia coli, GI1789963, Length=312, Percent_Identity=35.5769230769231, Blast_Score=215, Evalue=3e-57, Organism=Escherichia coli, GI48994883, Length=312, Percent_Identity=34.6153846153846, Blast_Score=213, Evalue=1e-56, Organism=Escherichia coli, GI145693107, Length=270, Percent_Identity=32.2222222222222, Blast_Score=180, Evalue=1e-46, Organism=Escherichia coli, GI1787500, Length=312, Percent_Identity=33.0128205128205, Blast_Score=171, Evalue=6e-44, Organism=Escherichia coli, GI1788506, Length=272, Percent_Identity=34.5588235294118, Blast_Score=170, Evalue=1e-43, Organism=Escherichia coli, GI1787548, Length=295, Percent_Identity=30.1694915254237, Blast_Score=164, Evalue=5e-42, Organism=Escherichia coli, GI1789962, Length=323, Percent_Identity=31.5789473684211, Blast_Score=163, Evalue=2e-41, Organism=Escherichia coli, GI1789890, Length=269, Percent_Identity=33.457249070632, Blast_Score=143, Evalue=1e-35, Organism=Escherichia coli, GI1787758, Length=319, Percent_Identity=27.5862068965517, Blast_Score=134, Evalue=1e-32, Organism=Escherichia coli, GI48994997, Length=235, Percent_Identity=31.4893617021277, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI1787547, Length=261, Percent_Identity=29.8850574712644, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1789032, Length=240, Percent_Identity=29.1666666666667, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI1786398, Length=253, Percent_Identity=29.2490118577075, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1788761, Length=233, Percent_Identity=31.3304721030043, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1788225, Length=249, Percent_Identity=30.1204819277108, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1789891, Length=221, Percent_Identity=29.8642533936652, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI87081791, Length=252, Percent_Identity=27.7777777777778, Blast_Score=85, Evalue=7e-18, Organism=Escherichia coli, GI1788450, Length=231, Percent_Identity=26.4069264069264, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1786319, Length=234, Percent_Identity=29.4871794871795, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI87081834, Length=227, Percent_Identity=28.1938325991189, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1790162, Length=239, Percent_Identity=25.9414225941423, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1790467, Length=274, Percent_Identity=25.5474452554745, Blast_Score=79, Evalue=6e-16, Organism=Escherichia coli, GI1787792, Length=229, Percent_Identity=27.9475982532751, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1787712, Length=255, Percent_Identity=27.4509803921569, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1786703, Length=235, Percent_Identity=27.6595744680851, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787105, Length=227, Percent_Identity=25.5506607929515, Blast_Score=76, Evalue=4e-15, Organism=Escherichia coli, GI1787029, Length=248, Percent_Identity=28.6290322580645, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI87081709, Length=236, Percent_Identity=25.8474576271186, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1787370, Length=227, Percent_Identity=25.1101321585903, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1786345, Length=251, Percent_Identity=26.6932270916335, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI87082267, Length=251, Percent_Identity=27.0916334661355, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1787089, Length=224, Percent_Identity=28.125, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1787143, Length=257, Percent_Identity=28.0155642023346, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI48994943, Length=229, Percent_Identity=26.2008733624454, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1787112, Length=235, Percent_Identity=27.2340425531915, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1789593, Length=225, Percent_Identity=24.4444444444444, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1789672, Length=238, Percent_Identity=24.7899159663866, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI87081782, Length=239, Percent_Identity=23.8493723849372, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1789991, Length=240, Percent_Identity=22.9166666666667, Blast_Score=63, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17565938, Length=274, Percent_Identity=27.7372262773723, Blast_Score=82, Evalue=5e-16, Organism=Caenorhabditis elegans, GI193202349, Length=248, Percent_Identity=29.4354838709677, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI212646699, Length=246, Percent_Identity=28.4552845528455, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17543740, Length=252, Percent_Identity=28.1746031746032, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17558664, Length=235, Percent_Identity=25.1063829787234, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17541710, Length=235, Percent_Identity=27.2340425531915, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI115533592, Length=211, Percent_Identity=30.3317535545024, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17569081, Length=245, Percent_Identity=28.1632653061224, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI25146777, Length=238, Percent_Identity=27.7310924369748, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI71983510, Length=257, Percent_Identity=23.7354085603113, Blast_Score=65, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71983516, Length=257, Percent_Identity=23.7354085603113, Blast_Score=65, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71983523, Length=257, Percent_Identity=23.7354085603113, Blast_Score=65, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=244, Percent_Identity=25.8196721311475, Blast_Score=67, Evalue=3e-12, Organism=Drosophila melanogaster, GI85726357, Length=256, Percent_Identity=26.5625, Blast_Score=81, Evalue=8e-16, Organism=Drosophila melanogaster, GI24641565, Length=270, Percent_Identity=26.2962962962963, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 34363; Mature: 34363
Theoretical pI: Translated: 9.35; Mature: 9.35
Prosite motif: PS00589 PTS_HPR_SER ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNMDIEIKNLKVEFPTKEGNVRAVDNISLKINMGKVLGLIGETGSGKSVLGLSILGLLSN CCCCEEEEEEEEECCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCCEEHHHHHHHHHCC SAIISGEILYKNTNLLSLNINDMRNLRGVDIALIPQNPSTALNPIMKVGKQICEGENNNK CEEEEEEEEEECCCEEEEEHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCC KDCKIKVVNLLKELFLSNPSKVADSYPFELSGGMKQRALASMGIYCNPNWIIADEPTKGL CCHHHHHHHHHHHHHHCCCHHHHCCCCEEECCCHHHHHHHHCCEEECCCEEEECCCCCCH DAIVRGQVYETLHKITNSRNCGMLLITHDLMLSKNLCDNIAVMYGGDIVEIGKAYDVLEN HHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHCEEEEECCCEEECCHHHHHHHC SKHPYTKGLVFSQPHKGLQPMKGSSPSLINPPIGCKFSQRCSNKIPICSLKKPDFYTLEN CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEECCCCEEEECC GSKVRCFLFDKSK CCEEEEEEEECCC >Mature Secondary Structure MNMDIEIKNLKVEFPTKEGNVRAVDNISLKINMGKVLGLIGETGSGKSVLGLSILGLLSN CCCCEEEEEEEEECCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCCEEHHHHHHHHHCC SAIISGEILYKNTNLLSLNINDMRNLRGVDIALIPQNPSTALNPIMKVGKQICEGENNNK CEEEEEEEEEECCCEEEEEHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCC KDCKIKVVNLLKELFLSNPSKVADSYPFELSGGMKQRALASMGIYCNPNWIIADEPTKGL CCHHHHHHHHHHHHHHCCCHHHHCCCCEEECCCHHHHHHHHCCEEECCCEEEECCCCCCH DAIVRGQVYETLHKITNSRNCGMLLITHDLMLSKNLCDNIAVMYGGDIVEIGKAYDVLEN HHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHCEEEEECCCEEECCHHHHHHHC SKHPYTKGLVFSQPHKGLQPMKGSSPSLINPPIGCKFSQRCSNKIPICSLKKPDFYTLEN CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEECCCCEEEECC GSKVRCFLFDKSK CCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1766370; 9384377 [H]