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The map label for this gene is dppC [H]

Identifier: 28211080

GI number: 28211080

Start: 1514582

End: 1515415

Strand: Direct

Name: dppC [H]

Synonym: CTC01402

Alternate gene names: 28211080

Gene position: 1514582-1515415 (Clockwise)

Preceding gene: 28211079

Following gene: 28211081

Centisome position: 54.11

GC content: 30.46

Gene sequence:

>834_bases
TTGGAGGTGAATCTTAATATGAAAATACATAAATTTGCTGTTATTACCTTAGGTACAATTCTATTTTTAAGTATATTTGC
TCCATTAATTTCTCCATACGATCCTATAAAAGTTGATATGGCAAACACACTATTGCCTGCCTCTAGAGAACACTTATTAG
GTACAGATGCCTTAGGTAGAGATGTATTTAGTAGATTACTTTATGGTGGACGAAGTTCTATTTTATTATCTGTTGTAGCT
TCAATAATAACTATGATTTTAGGTTTTATAATTGGATTACTATCAGGTTATTATGGTGGTAAGTTAGATTCCTTTATACA
GATAATAGTAAATATCCTACAATCCATACCTTCCATGAGTTTTATGATTGCCATAATAGGTATAATGGGCCCTGGTATAA
AAAGCATATTATTGTCCGTTGTAATTACATCTTGGGCTGGTTTTTCTAGAATAGTTAGAAGTGAAGTCTTAAGTATACGT
GAAGAAGATTACATTGAAGGTGCTAGGGCTATTGGAGCTATGGATTTTTACATAATAATACATCATATAATTCCAAATAT
AATAGGTCCTTTTATAGTTTTATTCACAGTAAGAATAGGTAAAGTTATATTGTCCATAGCAAGTCTTAGCTTTTTAGGAT
TGGGACTACAACCTCCTACTCCTGATTGGGGAATAATGATAAATGACGCTAAAACCTATTATATTAGCCATCCTATGCTA
ATGATAGCTCCTGGTGCTTTTATTATGCTTTTAAGTTTAAGCATTAATATAATTGGAGATTTTATAAGAGATTACTTGGA
CAAAGGAAAAGATATTTATAATCAATATATATAA

Upstream 100 bases:

>100_bases
CCTGTAATTCAAGGCTATGTTCTTTTTACAGGCATTATCTATATAATCTTTAATTTAATAATAGATTTATCCTACCTTGT
TTTAAACCCTAAAATAAGGC

Downstream 100 bases:

>100_bases
ATGAGGTAATTTTATGAATATGGATATAGAAATAAAAAATTTAAAAGTAGAATTTCCTACTAAAGAAGGAAATGTACGGG
CTGTAGATAATATCTCTCTT

Product: transport system permease, dipeptide or nickel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MEVNLNMKIHKFAVITLGTILFLSIFAPLISPYDPIKVDMANTLLPASREHLLGTDALGRDVFSRLLYGGRSSILLSVVA
SIITMILGFIIGLLSGYYGGKLDSFIQIIVNILQSIPSMSFMIAIIGIMGPGIKSILLSVVITSWAGFSRIVRSEVLSIR
EEDYIEGARAIGAMDFYIIIHHIIPNIIGPFIVLFTVRIGKVILSIASLSFLGLGLQPPTPDWGIMINDAKTYYISHPML
MIAPGAFIMLLSLSINIIGDFIRDYLDKGKDIYNQYI

Sequences:

>Translated_277_residues
MEVNLNMKIHKFAVITLGTILFLSIFAPLISPYDPIKVDMANTLLPASREHLLGTDALGRDVFSRLLYGGRSSILLSVVA
SIITMILGFIIGLLSGYYGGKLDSFIQIIVNILQSIPSMSFMIAIIGIMGPGIKSILLSVVITSWAGFSRIVRSEVLSIR
EEDYIEGARAIGAMDFYIIIHHIIPNIIGPFIVLFTVRIGKVILSIASLSFLGLGLQPPTPDWGIMINDAKTYYISHPML
MIAPGAFIMLLSLSINIIGDFIRDYLDKGKDIYNQYI
>Mature_277_residues
MEVNLNMKIHKFAVITLGTILFLSIFAPLISPYDPIKVDMANTLLPASREHLLGTDALGRDVFSRLLYGGRSSILLSVVA
SIITMILGFIIGLLSGYYGGKLDSFIQIIVNILQSIPSMSFMIAIIGIMGPGIKSILLSVVITSWAGFSRIVRSEVLSIR
EEDYIEGARAIGAMDFYIIIHHIIPNIIGPFIVLFTVRIGKVILSIASLSFLGLGLQPPTPDWGIMINDAKTYYISHPML
MIAPGAFIMLLSLSINIIGDFIRDYLDKGKDIYNQYI

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=249, Percent_Identity=40.9638554216867, Blast_Score=199, Evalue=1e-52,
Organism=Escherichia coli, GI1787760, Length=248, Percent_Identity=37.0967741935484, Blast_Score=184, Evalue=8e-48,
Organism=Escherichia coli, GI1789889, Length=236, Percent_Identity=34.7457627118644, Blast_Score=173, Evalue=9e-45,
Organism=Escherichia coli, GI1789964, Length=254, Percent_Identity=38.1889763779528, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1787498, Length=263, Percent_Identity=34.6007604562738, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1788505, Length=230, Percent_Identity=34.3478260869565, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1787549, Length=255, Percent_Identity=31.7647058823529, Blast_Score=122, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30483; Mature: 30483

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVNLNMKIHKFAVITLGTILFLSIFAPLISPYDPIKVDMANTLLPASREHLLGTDALGR
CEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHCCCCHHHHCCCHHHHH
DVFSRLLYGGRSSILLSVVASIITMILGFIIGLLSGYYGGKLDSFIQIIVNILQSIPSMS
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHH
FMIAIIGIMGPGIKSILLSVVITSWAGFSRIVRSEVLSIREEDYIEGARAIGAMDFYIII
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HHIIPNIIGPFIVLFTVRIGKVILSIASLSFLGLGLQPPTPDWGIMINDAKTYYISHPML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCEEEEEECCHH
MIAPGAFIMLLSLSINIIGDFIRDYLDKGKDIYNQYI
EECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCC
>Mature Secondary Structure
MEVNLNMKIHKFAVITLGTILFLSIFAPLISPYDPIKVDMANTLLPASREHLLGTDALGR
CEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECHHHHHCCCCHHHHCCCHHHHH
DVFSRLLYGGRSSILLSVVASIITMILGFIIGLLSGYYGGKLDSFIQIIVNILQSIPSMS
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHH
FMIAIIGIMGPGIKSILLSVVITSWAGFSRIVRSEVLSIREEDYIEGARAIGAMDFYIII
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HHIIPNIIGPFIVLFTVRIGKVILSIASLSFLGLGLQPPTPDWGIMINDAKTYYISHPML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCEEEEEECCHH
MIAPGAFIMLLSLSINIIGDFIRDYLDKGKDIYNQYI
EECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]