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The map label for this gene is xerC [H]

Identifier: 28210981

GI number: 28210981

Start: 1393171

End: 1394157

Strand: Direct

Name: xerC [H]

Synonym: CTC01296

Alternate gene names: 28210981

Gene position: 1393171-1394157 (Clockwise)

Preceding gene: 28210980

Following gene: 28210983

Centisome position: 49.77

GC content: 26.75

Gene sequence:

>987_bases
ATGTACAAGCTTAAGAATATATATGACCCTGAATTACCGCAACAATTAAATAATTTTCTTAATTATTTAACTACAGTAAA
AGAAAGATCCCCTAATACTATGAGTGCATATAAAGTGGATTTAGTTATGTTTTTTAGATTTCTAAAATTATACAAAACTA
AATTACCAAAGGATATAGAATTTGATGATATAGATATTAGTGATATAGACGATGAATTTATAAGAAAGATCACTCTTACA
GATCTTTATTCCTTTATGGCGTTTTTAGATAACTATAGGGATAACGGAAGTTATGCTAAAGCTAGAAAAGTAGCTACATT
AAAATCCTTCTTTAAGTTTTTATACAGTAAAGTAAAAATATTAGAAGAAAACCCTGCGATAGAATTAGAATCACCTAAAA
TTAAAAAGAGAAATCCAACCTACTTAACTTTAGAAGAAAGTAAAAGATTATTAGCTTCTATTGATGGCACTAATAAAGCA
AGGGATTATTGCATAATTACATTATTTTTAAATTGCGGACTTAGACTATCTGAATTATGCAGTATAGATATTTCTAAAAT
AAAGGAAGACACTCTTTATGTAATTGGTAAAGGTAATAAAGAAAGAACCATCTATTTAAATAAGGCATGCTTAAAAGCCG
TAGAAGATTATTTGAAGGTAAGAAATAAAAATTTAGATAAAATAAAGGATAAAGATGCATTGTTTATAAGCAGGAATAAT
ACTAGAATAAATAAAAGAACTGTAGAAATTATGTTGAAAAAATATTTAAAGAAAGCTAATTTAGATGAGGAAAAATACAC
ACCTCATAAGCTTAGACACACTGCTGCAACTCTTATGTATAAACATGGAGATGTAGATATTAGAAGCCTTCAAAAGATAT
TAGGTCATGAAAATATATCTACAACTCAAATTTATACTCATGTTGATAATGAAAAACTAAGAGAGGCTGTAAAATTAAAT
CCTCTAAGTGGAGAATCTATGGAATAA

Upstream 100 bases:

>100_bases
AGTATAATCATGTATATATTATTATATATTTTTCAGAGATTTTTATTCGCTAAATATACATTTAGCGAAATTGGATAGAA
TTTAGGAGGTTTTTAGCAAT

Downstream 100 bases:

>100_bases
TGAGCATTAAATGCTTGTTATTCTATCTTTTTAATTCTAATTAAACCAGGAAATTCTTCATATGTAAATTTTTCTGACTT
TTCTTGATTTTCTAATATCT

Product: site-specific tyrosine recombinase XerC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MYKLKNIYDPELPQQLNNFLNYLTTVKERSPNTMSAYKVDLVMFFRFLKLYKTKLPKDIEFDDIDISDIDDEFIRKITLT
DLYSFMAFLDNYRDNGSYAKARKVATLKSFFKFLYSKVKILEENPAIELESPKIKKRNPTYLTLEESKRLLASIDGTNKA
RDYCIITLFLNCGLRLSELCSIDISKIKEDTLYVIGKGNKERTIYLNKACLKAVEDYLKVRNKNLDKIKDKDALFISRNN
TRINKRTVEIMLKKYLKKANLDEEKYTPHKLRHTAATLMYKHGDVDIRSLQKILGHENISTTQIYTHVDNEKLREAVKLN
PLSGESME

Sequences:

>Translated_328_residues
MYKLKNIYDPELPQQLNNFLNYLTTVKERSPNTMSAYKVDLVMFFRFLKLYKTKLPKDIEFDDIDISDIDDEFIRKITLT
DLYSFMAFLDNYRDNGSYAKARKVATLKSFFKFLYSKVKILEENPAIELESPKIKKRNPTYLTLEESKRLLASIDGTNKA
RDYCIITLFLNCGLRLSELCSIDISKIKEDTLYVIGKGNKERTIYLNKACLKAVEDYLKVRNKNLDKIKDKDALFISRNN
TRINKRTVEIMLKKYLKKANLDEEKYTPHKLRHTAATLMYKHGDVDIRSLQKILGHENISTTQIYTHVDNEKLREAVKLN
PLSGESME
>Mature_328_residues
MYKLKNIYDPELPQQLNNFLNYLTTVKERSPNTMSAYKVDLVMFFRFLKLYKTKLPKDIEFDDIDISDIDDEFIRKITLT
DLYSFMAFLDNYRDNGSYAKARKVATLKSFFKFLYSKVKILEENPAIELESPKIKKRNPTYLTLEESKRLLASIDGTNKA
RDYCIITLFLNCGLRLSELCSIDISKIKEDTLYVIGKGNKERTIYLNKACLKAVEDYLKVRNKNLDKIKDKDALFISRNN
TRINKRTVEIMLKKYLKKANLDEEKYTPHKLRHTAATLMYKHGDVDIRSLQKILGHENISTTQIYTHVDNEKLREAVKLN
PLSGESME

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=309, Percent_Identity=32.6860841423948, Blast_Score=151, Evalue=5e-38,
Organism=Escherichia coli, GI1790244, Length=221, Percent_Identity=35.7466063348416, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI1790767, Length=177, Percent_Identity=32.2033898305085, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 38408; Mature: 38408

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKLKNIYDPELPQQLNNFLNYLTTVKERSPNTMSAYKVDLVMFFRFLKLYKTKLPKDIE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
FDDIDISDIDDEFIRKITLTDLYSFMAFLDNYRDNGSYAKARKVATLKSFFKFLYSKVKI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LEENPAIELESPKIKKRNPTYLTLEESKRLLASIDGTNKARDYCIITLFLNCGLRLSELC
HCCCCCEEECCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCHHEEEEEEHHCCCCHHHHH
SIDISKIKEDTLYVIGKGNKERTIYLNKACLKAVEDYLKVRNKNLDKIKDKDALFISRNN
HHHHHHCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHCCCHHHHCCCCEEEEECCC
TRINKRTVEIMLKKYLKKANLDEEKYTPHKLRHTAATLMYKHGDVDIRSLQKILGHENIS
CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCC
TTQIYTHVDNEKLREAVKLNPLSGESME
CEEEEEECCHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MYKLKNIYDPELPQQLNNFLNYLTTVKERSPNTMSAYKVDLVMFFRFLKLYKTKLPKDIE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
FDDIDISDIDDEFIRKITLTDLYSFMAFLDNYRDNGSYAKARKVATLKSFFKFLYSKVKI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LEENPAIELESPKIKKRNPTYLTLEESKRLLASIDGTNKARDYCIITLFLNCGLRLSELC
HCCCCCEEECCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCHHEEEEEEHHCCCCHHHHH
SIDISKIKEDTLYVIGKGNKERTIYLNKACLKAVEDYLKVRNKNLDKIKDKDALFISRNN
HHHHHHCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHCCCHHHHCCCCEEEEECCC
TRINKRTVEIMLKKYLKKANLDEEKYTPHKLRHTAATLMYKHGDVDIRSLQKILGHENIS
CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCC
TTQIYTHVDNEKLREAVKLNPLSGESME
CEEEEEECCHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]