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The map label for this gene is smf [H]

Identifier: 28210944

GI number: 28210944

Start: 1346721

End: 1347806

Strand: Direct

Name: smf [H]

Synonym: CTC01258

Alternate gene names: 28210944

Gene position: 1346721-1347806 (Clockwise)

Preceding gene: 28210943

Following gene: 28210945

Centisome position: 48.11

GC content: 25.14

Gene sequence:

>1086_bases
ATGGAGTTTGATATATGGTATTCATTAGTAAGATTCTCTAATAGAGATAAACTAAGTCTTTTAAAAAAATTTAAAAGCAC
TGAAAATATTTGGAGGAATGTTTGTAATAATAAGTTAGAAGTAGACCAAGATAAAAATATAATAAAATTAAGACATATTT
TAAAGAAATATTGGGATGAAAATAGAATTAAAGAAATAAAAAATATATTAACATCAAAAAATATAGAAATAATAAATTAT
TATAGTGAAAATTACCCTAAAAATTTAAAGCCCTTTGAAGATGCTCCCTCTATACTATATTATAGAGGGGATATAGAAAA
AATAAATTCAAATAAAAATTTAGCTATAGTTGGATCTAGAGACTACAGTTATTATGGAGAAAATGTAACTAGTATTATTT
CTAGAGAAATGGCAAAAAATAATATTAATATAATAAGTGGTATGGCTAAAGGGATAGATGCCTTTGCCCATAAATATTCA
CTACAAGCAAAAGGTTACACTTGTGCTGTATTGGGTTCAGGAATAGATGTTATATATCCTTATATAAACAAGAATATATA
CTATAAATTATTAGAAGAAGGAAGTGTAATATCAGAATTTCTTCCAGGTATAAAACCCTATCCATATAACTTTCCTCTAA
GAAATAGAATAATAAGTGGATTAAGCGATGCTGTAATTATAATAGAAGCTTCAGAAAAAAGTGGCTCTTTAATAACTGCT
TCTTGTGCTCTAGAACAAGGCAAAGATGTTATGGCAGTACCTGGATCTATATTTTCTAAAAAAAGCATAGGAACAAATAA
ACTTATTAAAGACGGAGCATATCCTTTTACAACTATTGAAGACATTTATAATCTATTAAATATAAATTATAAAGAAAAAA
TTGAGATAGAAAAAAATAACTTGAATAAAATAGAAAATGAAATTTATACTGTAATAGAAGATACGCCAATTCATATAGAT
GATATAGTAAGAGTAACTAAAGTTGACATAAAGAGGTTATATGAGGTATTATTTGAATTGCAATTTAAAAATCATATAAC
TTGCCTTTCTGGCAATTATTATGTTAGAATTTCAAATAGCATTTAA

Upstream 100 bases:

>100_bases
GATTTAGATGAAAGAGAAAATATAATAGAAGAAGACTTAATTGAAGCTCTTCAGTATAGAAGGTTTTTAGAAAATATAGT
ATAAAAGAGGTGTATATATT

Downstream 100 bases:

>100_bases
AATAATAGGAAATTTAGGGGGTGAAACTCTGATAATATAAATATCAGAGATGATTATGGGACAAAAACTTATCATTGTGG
AATCACCAGCAAAAGCAAAA

Product: SMF protein, putative DNA processing chain A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MEFDIWYSLVRFSNRDKLSLLKKFKSTENIWRNVCNNKLEVDQDKNIIKLRHILKKYWDENRIKEIKNILTSKNIEIINY
YSENYPKNLKPFEDAPSILYYRGDIEKINSNKNLAIVGSRDYSYYGENVTSIISREMAKNNINIISGMAKGIDAFAHKYS
LQAKGYTCAVLGSGIDVIYPYINKNIYYKLLEEGSVISEFLPGIKPYPYNFPLRNRIISGLSDAVIIIEASEKSGSLITA
SCALEQGKDVMAVPGSIFSKKSIGTNKLIKDGAYPFTTIEDIYNLLNINYKEKIEIEKNNLNKIENEIYTVIEDTPIHID
DIVRVTKVDIKRLYEVLFELQFKNHITCLSGNYYVRISNSI

Sequences:

>Translated_361_residues
MEFDIWYSLVRFSNRDKLSLLKKFKSTENIWRNVCNNKLEVDQDKNIIKLRHILKKYWDENRIKEIKNILTSKNIEIINY
YSENYPKNLKPFEDAPSILYYRGDIEKINSNKNLAIVGSRDYSYYGENVTSIISREMAKNNINIISGMAKGIDAFAHKYS
LQAKGYTCAVLGSGIDVIYPYINKNIYYKLLEEGSVISEFLPGIKPYPYNFPLRNRIISGLSDAVIIIEASEKSGSLITA
SCALEQGKDVMAVPGSIFSKKSIGTNKLIKDGAYPFTTIEDIYNLLNINYKEKIEIEKNNLNKIENEIYTVIEDTPIHID
DIVRVTKVDIKRLYEVLFELQFKNHITCLSGNYYVRISNSI
>Mature_361_residues
MEFDIWYSLVRFSNRDKLSLLKKFKSTENIWRNVCNNKLEVDQDKNIIKLRHILKKYWDENRIKEIKNILTSKNIEIINY
YSENYPKNLKPFEDAPSILYYRGDIEKINSNKNLAIVGSRDYSYYGENVTSIISREMAKNNINIISGMAKGIDAFAHKYS
LQAKGYTCAVLGSGIDVIYPYINKNIYYKLLEEGSVISEFLPGIKPYPYNFPLRNRIISGLSDAVIIIEASEKSGSLITA
SCALEQGKDVMAVPGSIFSKKSIGTNKLIKDGAYPFTTIEDIYNLLNINYKEKIEIEKNNLNKIENEIYTVIEDTPIHID
DIVRVTKVDIKRLYEVLFELQFKNHITCLSGNYYVRISNSI

Specific function: Unknown

COG id: COG0758

COG function: function code LU; Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smf family [H]

Homologues:

Organism=Escherichia coli, GI48994932, Length=300, Percent_Identity=36, Blast_Score=192, Evalue=4e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003488 [H]

Pfam domain/function: PF02481 DNA_processg_A [H]

EC number: NA

Molecular weight: Translated: 41623; Mature: 41623

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFDIWYSLVRFSNRDKLSLLKKFKSTENIWRNVCNNKLEVDQDKNIIKLRHILKKYWDE
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHCCC
NRIKEIKNILTSKNIEIINYYSENYPKNLKPFEDAPSILYYRGDIEKINSNKNLAIVGSR
HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCHHEECCCCCEEEEECC
DYSYYGENVTSIISREMAKNNINIISGMAKGIDAFAHKYSLQAKGYTCAVLGSGIDVIYP
CCCHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCEEEEH
YINKNIYYKLLEEGSVISEFLPGIKPYPYNFPLRNRIISGLSDAVIIIEASEKSGSLITA
HHCCCEEEEEHHCCCHHHHHCCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCEEEE
SCALEQGKDVMAVPGSIFSKKSIGTNKLIKDGAYPFTTIEDIYNLLNINYKEKIEIEKNN
EEHHHCCCCEEECCCCHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCHHEEEEECCC
LNKIENEIYTVIEDTPIHIDDIVRVTKVDIKRLYEVLFELQFKNHITCLSGNYYVRISNS
HHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECC
I
C
>Mature Secondary Structure
MEFDIWYSLVRFSNRDKLSLLKKFKSTENIWRNVCNNKLEVDQDKNIIKLRHILKKYWDE
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHCCC
NRIKEIKNILTSKNIEIINYYSENYPKNLKPFEDAPSILYYRGDIEKINSNKNLAIVGSR
HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCHHEECCCCCEEEEECC
DYSYYGENVTSIISREMAKNNINIISGMAKGIDAFAHKYSLQAKGYTCAVLGSGIDVIYP
CCCHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCEEEEH
YINKNIYYKLLEEGSVISEFLPGIKPYPYNFPLRNRIISGLSDAVIIIEASEKSGSLITA
HHCCCEEEEEHHCCCHHHHHCCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCEEEE
SCALEQGKDVMAVPGSIFSKKSIGTNKLIKDGAYPFTTIEDIYNLLNINYKEKIEIEKNN
EEHHHCCCCEEECCCCHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCHHEEEEECCC
LNKIENEIYTVIEDTPIHIDDIVRVTKVDIKRLYEVLFELQFKNHITCLSGNYYVRISNS
HHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECC
I
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8432722; 8112305; 9278503 [H]