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The map label for this gene is rbgA [H]

Identifier: 28210940

GI number: 28210940

Start: 1342835

End: 1343731

Strand: Direct

Name: rbgA [H]

Synonym: CTC01254

Alternate gene names: 28210940

Gene position: 1342835-1343731 (Clockwise)

Preceding gene: 28210939

Following gene: 28210941

Centisome position: 47.97

GC content: 30.77

Gene sequence:

>897_bases
GTGGGGTATGTTATCTGCTATAACAAATTAACTTCGGAAAGGAAGATTAACATGGATATAAACTGGTTTCCTGGTCATAT
GGCTAAAACTAGAAGAGAGTTAAAAGAAAATTTAAAAATGGTAGACGCAATTATAGAAATAAGGGATGCCAGAATAGTAA
AATCTAGTGCCAATCCAGAAATAGAAAATATATGTGGAAACAAGCCTAGAATTATATTATTAAATAAAAGTGATCTAGGA
GAAGAAAAGGTAACTAATGAATGGATAAAAGCTTTATCAGGAGAAAACACAAAGGTAATAGCAATAAATAGTCTTAAAGA
TTCTGGAATGAAGAAGATAAAGAATGCTATAGATGACCTTTTAAAAGAAAAAACTGAAAAATTAAAAGCTAAGGGTTTAA
AGAATATAGTAAATAGAGTTATGGTAGTAGGTATTCCTAATGTTGGAAAATCTACTTTTATAAATAGAATGGCTAAAAGT
AGTATAGCGAAGACTGGAGATAGACCAGGAGTTACTAAAAGTAGACAATGGATAAAAACAAAGATAGGTGTAGAACTTAT
GGATACTCCAGGTATACTTTGGCCTAAATTTGAAGATGAAAAGGTAGGATTAAACCTAGCCTTTACAGGTGCCATAAAAG
ATGAAATCATGGATATAGAAACCCTTGCATTAAATCTTATAGAAAGATTATCAGAGGACTATGGTGAAAATTTAAAAGAG
AGATATAAATTAGATAAATTAGAGGAGATCCCTTTAGATAATATGGAGAATATAGCAAAAAAAAGAGGAGCTATATTAGG
GAGAGGAGAAATAGATTATAATAGAGTAGCTATAATGATTTTAGATGAGTTTAGAGGTGGAAAACTGGGAAGGATATCTC
TGGAAAAACCAGAATAG

Upstream 100 bases:

>100_bases
ACAGAAATAATAGTTTAGACAGTAGAGATGAAAGAGTGGGCTTTGTAAAGCTAAATATGGTAGTAGGAAAAGCTACATTA
AGAATATATCCTTTTAAAAA

Downstream 100 bases:

>100_bases
GTAAGGGAGATAATATGGAGAAAGAAATTTATAAAATGGACTTTAATGATATGACTTTTAAAGATATAAAAGATATTGTA
GATGGAATGAAGAAAGTTGA

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MGYVICYNKLTSERKINMDINWFPGHMAKTRRELKENLKMVDAIIEIRDARIVKSSANPEIENICGNKPRIILLNKSDLG
EEKVTNEWIKALSGENTKVIAINSLKDSGMKKIKNAIDDLLKEKTEKLKAKGLKNIVNRVMVVGIPNVGKSTFINRMAKS
SIAKTGDRPGVTKSRQWIKTKIGVELMDTPGILWPKFEDEKVGLNLAFTGAIKDEIMDIETLALNLIERLSEDYGENLKE
RYKLDKLEEIPLDNMENIAKKRGAILGRGEIDYNRVAIMILDEFRGGKLGRISLEKPE

Sequences:

>Translated_298_residues
MGYVICYNKLTSERKINMDINWFPGHMAKTRRELKENLKMVDAIIEIRDARIVKSSANPEIENICGNKPRIILLNKSDLG
EEKVTNEWIKALSGENTKVIAINSLKDSGMKKIKNAIDDLLKEKTEKLKAKGLKNIVNRVMVVGIPNVGKSTFINRMAKS
SIAKTGDRPGVTKSRQWIKTKIGVELMDTPGILWPKFEDEKVGLNLAFTGAIKDEIMDIETLALNLIERLSEDYGENLKE
RYKLDKLEEIPLDNMENIAKKRGAILGRGEIDYNRVAIMILDEFRGGKLGRISLEKPE
>Mature_297_residues
GYVICYNKLTSERKINMDINWFPGHMAKTRRELKENLKMVDAIIEIRDARIVKSSANPEIENICGNKPRIILLNKSDLGE
EKVTNEWIKALSGENTKVIAINSLKDSGMKKIKNAIDDLLKEKTEKLKAKGLKNIVNRVMVVGIPNVGKSTFINRMAKSS
IAKTGDRPGVTKSRQWIKTKIGVELMDTPGILWPKFEDEKVGLNLAFTGAIKDEIMDIETLALNLIERLSEDYGENLKER
YKLDKLEEIPLDNMENIAKKRGAILGRGEIDYNRVAIMILDEFRGGKLGRISLEKPE

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=301, Percent_Identity=32.890365448505, Blast_Score=149, Evalue=2e-36,
Organism=Homo sapiens, GI7019419, Length=266, Percent_Identity=27.4436090225564, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI296317324, Length=232, Percent_Identity=28.8793103448276, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI9506611, Length=232, Percent_Identity=28.8793103448276, Blast_Score=76, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI193211047, Length=276, Percent_Identity=30.0724637681159, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI32563985, Length=225, Percent_Identity=27.5555555555556, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI71990926, Length=221, Percent_Identity=27.6018099547511, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI32563983, Length=221, Percent_Identity=27.6018099547511, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17534827, Length=283, Percent_Identity=26.1484098939929, Blast_Score=76, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6324381, Length=270, Percent_Identity=26.6666666666667, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6320842, Length=302, Percent_Identity=27.4834437086093, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI85815858, Length=312, Percent_Identity=32.0512820512821, Blast_Score=127, Evalue=9e-30,
Organism=Drosophila melanogaster, GI28572990, Length=292, Percent_Identity=27.7397260273973, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI19922460, Length=287, Percent_Identity=28.2229965156794, Blast_Score=78, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 33725; Mature: 33594

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYVICYNKLTSERKINMDINWFPGHMAKTRRELKENLKMVDAIIEIRDARIVKSSANPE
CCEEEEECCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC
IENICGNKPRIILLNKSDLGEEKVTNEWIKALSGENTKVIAINSLKDSGMKKIKNAIDDL
HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHH
LKEKTEKLKAKGLKNIVNRVMVVGIPNVGKSTFINRMAKSSIAKTGDRPGVTKSRQWIKT
HHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
KIGVELMDTPGILWPKFEDEKVGLNLAFTGAIKDEIMDIETLALNLIERLSEDYGENLKE
HCCEEEECCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYKLDKLEEIPLDNMENIAKKRGAILGRGEIDYNRVAIMILDEFRGGKLGRISLEKPE
HHHHHHHHHCCCCCHHHHHHHHCCEEECCCCCCCEEEEEEEECCCCCCEEEEECCCCC
>Mature Secondary Structure 
GYVICYNKLTSERKINMDINWFPGHMAKTRRELKENLKMVDAIIEIRDARIVKSSANPE
CEEEEECCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC
IENICGNKPRIILLNKSDLGEEKVTNEWIKALSGENTKVIAINSLKDSGMKKIKNAIDDL
HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHH
LKEKTEKLKAKGLKNIVNRVMVVGIPNVGKSTFINRMAKSSIAKTGDRPGVTKSRQWIKT
HHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
KIGVELMDTPGILWPKFEDEKVGLNLAFTGAIKDEIMDIETLALNLIERLSEDYGENLKE
HCCEEEECCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYKLDKLEEIPLDNMENIAKKRGAILGRGEIDYNRVAIMILDEFRGGKLGRISLEKPE
HHHHHHHHHCCCCCHHHHHHHHCCEEECCCCCCCEEEEEEEECCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]