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The map label for this gene is yxkH [H]

Identifier: 28210877

GI number: 28210877

Start: 1267554

End: 1268306

Strand: Direct

Name: yxkH [H]

Synonym: CTC01186

Alternate gene names: 28210877

Gene position: 1267554-1268306 (Clockwise)

Preceding gene: 28210875

Following gene: 28210880

Centisome position: 45.28

GC content: 27.22

Gene sequence:

>753_bases
ATGAAAAGAAGACATAAAATTATAATGACTATATTAATAGTAGCATTGGTTTTACCTGGATTTTTAAATCATTCTCATTC
AAAAACTGAGAATGATTTTTCTATACCAGTATTAATGTATCATTCTATATCTAATGAGGAAAAAGGTTTATTCAAGGTTC
CAAAGAATACCTTTTATGAACACATGAAATATCTTAAAGATAATGATTATAAAACGCTAACTTTAGACGAACTATATGAT
CATTTAATAAATGGAATACCTTTTTCTGAAAAATCTGTAGCTATAACCTTTGATGATGGATATAGTGATAATTATAAAAA
TGCTTATCCAATATTAAAAAAGCTTGGGCTTAAAGCCACTATTTTTACTATAACAGACTATATAGCTGATAATTCTTATT
TTATGAGTAAAAATCAGTTAAAAGAAGTAGCTTTAAATGGAATAGATATAGAAAGCCATACAACTAATCATCCAAAGTTG
GACAAACTATCACAGGAAGATAGAGTGAAAACCTTGAAAAAGTCAAAAGATGCCATTGAAAAATTATTGGACAAAGAAGT
GAAATATATAGCATATCCTTTTGGAAGATGCAACCAAGAAGTAATAGATGATGTAAAAAATGCAGGATATAAAATGGCAT
TCACTACAAAAATGGGGTTTGCAAATATGAGTAGCGGTATATATGAATTAAAAAGGGTATTTATAAGTGGATATGCTGAT
GTAAAAAGATTTGAGAAGAAAATATGCAATTAA

Upstream 100 bases:

>100_bases
TTGTTGATATAAAAAATGTTGAAAACTTAGGTTATATGTAGAATAATGATATAATAAGATAAAATACCGATATGATATAA
TATTAAGGAAGTGAATTTTA

Downstream 100 bases:

>100_bases
TTAAAAAAAGTGAGTGGAAAATTTATTCCCTCACTTTTTTTATATAGATTATAATTTTTCTGTTTCGTTTTTAGTATTTA
AAAATTCAAATTTTTCTACT

Product: polysaccharide deacetylase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MKRRHKIIMTILIVALVLPGFLNHSHSKTENDFSIPVLMYHSISNEEKGLFKVPKNTFYEHMKYLKDNDYKTLTLDELYD
HLINGIPFSEKSVAITFDDGYSDNYKNAYPILKKLGLKATIFTITDYIADNSYFMSKNQLKEVALNGIDIESHTTNHPKL
DKLSQEDRVKTLKKSKDAIEKLLDKEVKYIAYPFGRCNQEVIDDVKNAGYKMAFTTKMGFANMSSGIYELKRVFISGYAD
VKRFEKKICN

Sequences:

>Translated_250_residues
MKRRHKIIMTILIVALVLPGFLNHSHSKTENDFSIPVLMYHSISNEEKGLFKVPKNTFYEHMKYLKDNDYKTLTLDELYD
HLINGIPFSEKSVAITFDDGYSDNYKNAYPILKKLGLKATIFTITDYIADNSYFMSKNQLKEVALNGIDIESHTTNHPKL
DKLSQEDRVKTLKKSKDAIEKLLDKEVKYIAYPFGRCNQEVIDDVKNAGYKMAFTTKMGFANMSSGIYELKRVFISGYAD
VKRFEKKICN
>Mature_250_residues
MKRRHKIIMTILIVALVLPGFLNHSHSKTENDFSIPVLMYHSISNEEKGLFKVPKNTFYEHMKYLKDNDYKTLTLDELYD
HLINGIPFSEKSVAITFDDGYSDNYKNAYPILKKLGLKATIFTITDYIADNSYFMSKNQLKEVALNGIDIESHTTNHPKL
DKLSQEDRVKTLKKSKDAIEKLLDKEVKYIAYPFGRCNQEVIDDVKNAGYKMAFTTKMGFANMSSGIYELKRVFISGYAD
VKRFEKKICN

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Escherichia coli, GI1786322, Length=229, Percent_Identity=30.5676855895196, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1787260, Length=257, Percent_Identity=23.3463035019455, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 28885; Mature: 28885

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRRHKIIMTILIVALVLPGFLNHSHSKTENDFSIPVLMYHSISNEEKGLFKVPKNTFYE
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCEEECCHHHHHH
HMKYLKDNDYKTLTLDELYDHLINGIPFSEKSVAITFDDGYSDNYKNAYPILKKLGLKAT
HHHHHHCCCCCEEEHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCH
IFTITDYIADNSYFMSKNQLKEVALNGIDIESHTTNHPKLDKLSQEDRVKTLKKSKDAIE
HHHHHHHHCCCCEEECHHHHHHHHHCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHH
KLLDKEVKYIAYPFGRCNQEVIDDVKNAGYKMAFTTKMGFANMSSGIYELKRVFISGYAD
HHHHHHHHHEECCCCCCCHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHCHHH
VKRFEKKICN
HHHHHHHHCC
>Mature Secondary Structure
MKRRHKIIMTILIVALVLPGFLNHSHSKTENDFSIPVLMYHSISNEEKGLFKVPKNTFYE
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCEEECCHHHHHH
HMKYLKDNDYKTLTLDELYDHLINGIPFSEKSVAITFDDGYSDNYKNAYPILKKLGLKAT
HHHHHHCCCCCEEEHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCH
IFTITDYIADNSYFMSKNQLKEVALNGIDIESHTTNHPKLDKLSQEDRVKTLKKSKDAIE
HHHHHHHHCCCCEEECHHHHHHHHHCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHH
KLLDKEVKYIAYPFGRCNQEVIDDVKNAGYKMAFTTKMGFANMSSGIYELKRVFISGYAD
HHHHHHHHHEECCCCCCCHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHCHHH
VKRFEKKICN
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]