| Definition | Clostridium tetani E88 chromosome, complete genome. |
|---|---|
| Accession | NC_004557 |
| Length | 2,799,251 |
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The map label for this gene is 28210805
Identifier: 28210805
GI number: 28210805
Start: 1171194
End: 1172429
Strand: Direct
Name: 28210805
Synonym: CTC01105
Alternate gene names: NA
Gene position: 1171194-1172429 (Clockwise)
Preceding gene: 28210804
Following gene: 28210806
Centisome position: 41.84
GC content: 29.37
Gene sequence:
>1236_bases ATGGCAGAAGAAAAATTTTATTATGCAGAAGGAAGTTGCCAGGTTAAGGATTTAGTAAAAAATCTAGTAACGGAAATAAC AAAAAATGCTGGAATATACAAATGGAATTTGGTTTATCCAAAAACACTAGATGAAATAGGAACATCAGGTGAAAATAAAG AAATAAATCTTATTACAGATGATTCTACAACAGATAAGGTGGATACTAAGTTTACAGTAACAGAACAAAATGATACCTGC ATTATTAAGGCTACAACAACATATGGTAAAGAATTTTATGTAAAAATAGATAGAGAAAAAGCAGATTTAACAAAAGAGGA AAAGAAAGCATTAGTTGATTTTAAAAGTTTACATAGATATTGTATACGGGAATATTGTTATGATAGAACAGATGCGCAAG TATTAGAAATAATGGCAGGTGTAAATGATGAATCAAGTAAAAGTGGAGATTACAATGCTTACGTAAGTGCCATGACAAAA TCTAATTCAATTAATAATATAAGATTACAAATATCAGATAAATTAAATAAAGAAGGTAATGATTTAGATATACCTAAAAA TATGCAAAAGGAATATAATTATAGACTAGCTTGGTATAGAAAGTTACAACCAGAAATTAAGGACTTTTTACCAGTTCAAT ATTGGATCAATGTAACTAAAGATAGTATAAATTTAGTTTTGCGTGGAGATCCTTCGGCAGATGTGCATCCATATGAAAAC TATTTAACATCCTATGCTTATATGGGAGCATTAAAACCAGTTGAAGATAGTGCTACAACAGATGATAAATATAATTTTGG TATAACTGTATCTTCTGATATAGAACCTAATTATACAAAGCTCTATGGAGAAAGAACAGCTACTGGAGTAACAGATATGT GTATGATAGCTAATAAAATAGGTATGCCTTATCAGCCACATTACCCTGCTTTCTATGCTACTAATCCATTTATGGACAAG TGTAATGTAGAAGGTTCGAGATGGAATCATAAGAAACATCAATTTAGCGATATTACTTTAGTACATCCAGTAGATATGGA AAGAGGAAAGATGATCAATGTACTTGCTGGAGATGCTAGTGCAATATATGATATGGATAAATTAGCATATAAGAAAGATA CAGATGAAGAAGAATATTACAAGAAATTTAAACTCACAGCACCTTTTAATTTTCTTAATAATAGTGCAAATATTAATTAT TGTATAGCTATAAGGTGTTATAAAACAACAGAATAG
Upstream 100 bases:
>100_bases ATGTAATTAGAGAAACTATACAAATAAATCTAAACACTTTAGAAATAAAAGAAATAAATAGAGATATTAACTTAGAAAAA TTTTTAGGAGGTAGATAAAT
Downstream 100 bases:
>100_bases GAGGTTCTTTATATGCCCCTACATAAAATACCCCTATGTAGTCTTAAATATGTAGGGGATACTCATTCTGGTGCAACTTT TAAATATGATATTACAAGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 411; Mature: 410
Protein sequence:
>411_residues MAEEKFYYAEGSCQVKDLVKNLVTEITKNAGIYKWNLVYPKTLDEIGTSGENKEINLITDDSTTDKVDTKFTVTEQNDTC IIKATTTYGKEFYVKIDREKADLTKEEKKALVDFKSLHRYCIREYCYDRTDAQVLEIMAGVNDESSKSGDYNAYVSAMTK SNSINNIRLQISDKLNKEGNDLDIPKNMQKEYNYRLAWYRKLQPEIKDFLPVQYWINVTKDSINLVLRGDPSADVHPYEN YLTSYAYMGALKPVEDSATTDDKYNFGITVSSDIEPNYTKLYGERTATGVTDMCMIANKIGMPYQPHYPAFYATNPFMDK CNVEGSRWNHKKHQFSDITLVHPVDMERGKMINVLAGDASAIYDMDKLAYKKDTDEEEYYKKFKLTAPFNFLNNSANINY CIAIRCYKTTE
Sequences:
>Translated_411_residues MAEEKFYYAEGSCQVKDLVKNLVTEITKNAGIYKWNLVYPKTLDEIGTSGENKEINLITDDSTTDKVDTKFTVTEQNDTC IIKATTTYGKEFYVKIDREKADLTKEEKKALVDFKSLHRYCIREYCYDRTDAQVLEIMAGVNDESSKSGDYNAYVSAMTK SNSINNIRLQISDKLNKEGNDLDIPKNMQKEYNYRLAWYRKLQPEIKDFLPVQYWINVTKDSINLVLRGDPSADVHPYEN YLTSYAYMGALKPVEDSATTDDKYNFGITVSSDIEPNYTKLYGERTATGVTDMCMIANKIGMPYQPHYPAFYATNPFMDK CNVEGSRWNHKKHQFSDITLVHPVDMERGKMINVLAGDASAIYDMDKLAYKKDTDEEEYYKKFKLTAPFNFLNNSANINY CIAIRCYKTTE >Mature_410_residues AEEKFYYAEGSCQVKDLVKNLVTEITKNAGIYKWNLVYPKTLDEIGTSGENKEINLITDDSTTDKVDTKFTVTEQNDTCI IKATTTYGKEFYVKIDREKADLTKEEKKALVDFKSLHRYCIREYCYDRTDAQVLEIMAGVNDESSKSGDYNAYVSAMTKS NSINNIRLQISDKLNKEGNDLDIPKNMQKEYNYRLAWYRKLQPEIKDFLPVQYWINVTKDSINLVLRGDPSADVHPYENY LTSYAYMGALKPVEDSATTDDKYNFGITVSSDIEPNYTKLYGERTATGVTDMCMIANKIGMPYQPHYPAFYATNPFMDKC NVEGSRWNHKKHQFSDITLVHPVDMERGKMINVLAGDASAIYDMDKLAYKKDTDEEEYYKKFKLTAPFNFLNNSANINYC IAIRCYKTTE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47351; Mature: 47220
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEEKFYYAEGSCQVKDLVKNLVTEITKNAGIYKWNLVYPKTLDEIGTSGENKEINLITD CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHCCCCCCCEEEEEEC DSTTDKVDTKFTVTEQNDTCIIKATTTYGKEFYVKIDREKADLTKEEKKALVDFKSLHRY CCCCCCCCCEEEEEECCCEEEEEEECCCCCEEEEEEECCHHCCCHHHHHHHHHHHHHHHH CIREYCYDRTDAQVLEIMAGVNDESSKSGDYNAYVSAMTKSNSINNIRLQISDKLNKEGN HHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCC DLDIPKNMQKEYNYRLAWYRKLQPEIKDFLPVQYWINVTKDSINLVLRGDPSADVHPYEN CCCCCCHHHHHCCEEEEEEECCCHHHHHCCCEEEEEEEECCCEEEEEECCCCCCCCCHHH YLTSYAYMGALKPVEDSATTDDKYNFGITVSSDIEPNYTKLYGERTATGVTDMCMIANKI HHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHEECCCCCCCHHHHHHHHHHC GMPYQPHYPAFYATNPFMDKCNVEGSRWNHKKHQFSDITLVHPVDMERGKMINVLAGDAS CCCCCCCCCEEEECCCCCHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCH AIYDMDKLAYKKDTDEEEYYKKFKLTAPFNFLNNSANINYCIAIRCYKTTE HHHHHHHHHHCCCCCHHHHHHHEEEECCHHHHCCCCCEEEEEEEEEEECCC >Mature Secondary Structure AEEKFYYAEGSCQVKDLVKNLVTEITKNAGIYKWNLVYPKTLDEIGTSGENKEINLITD CCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHCCCCCCCEEEEEEC DSTTDKVDTKFTVTEQNDTCIIKATTTYGKEFYVKIDREKADLTKEEKKALVDFKSLHRY CCCCCCCCCEEEEEECCCEEEEEEECCCCCEEEEEEECCHHCCCHHHHHHHHHHHHHHHH CIREYCYDRTDAQVLEIMAGVNDESSKSGDYNAYVSAMTKSNSINNIRLQISDKLNKEGN HHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCC DLDIPKNMQKEYNYRLAWYRKLQPEIKDFLPVQYWINVTKDSINLVLRGDPSADVHPYEN CCCCCCHHHHHCCEEEEEEECCCHHHHHCCCEEEEEEEECCCEEEEEECCCCCCCCCHHH YLTSYAYMGALKPVEDSATTDDKYNFGITVSSDIEPNYTKLYGERTATGVTDMCMIANKI HHHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHEECCCCCCCHHHHHHHHHHC GMPYQPHYPAFYATNPFMDKCNVEGSRWNHKKHQFSDITLVHPVDMERGKMINVLAGDAS CCCCCCCCCEEEECCCCCHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCH AIYDMDKLAYKKDTDEEEYYKKFKLTAPFNFLNNSANINYCIAIRCYKTTE HHHHHHHHHHCCCCCHHHHHHHEEEECCHHHHCCCCCEEEEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA