| Definition | Clostridium tetani E88 chromosome, complete genome. |
|---|---|
| Accession | NC_004557 |
| Length | 2,799,251 |
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The map label for this gene is spoVD [H]
Identifier: 28210767
GI number: 28210767
Start: 1135842
End: 1137494
Strand: Direct
Name: spoVD [H]
Synonym: CTC01065
Alternate gene names: 28210767
Gene position: 1135842-1137494 (Clockwise)
Preceding gene: 28210766
Following gene: 28210768
Centisome position: 40.58
GC content: 26.44
Gene sequence:
>1653_bases GTGTTTTTTATTCATAAGGAAAGATGTTATATAATACTTTTGTTTTTTTTAATATCATTAGGATTTTTAAATTTAAGATT ATACAATCTACAATACAAAGATAGAGAAAGATATAATGTTATGGCAAATATGCAGCATTCTTATGTAGAAACTACAAGGG ACTTAAATTATAAATTATTGGATTGTAATGGAGATAATTTATTAAAGTACAAAGAAGAATATAAAGCTGTTATAATACCT AAAGTATTTATAAAGCAAAATGAAGAAGAAAACTATAAAGAATATTTAAAAATAATAGAGGAATTAGAACTTTACAATGA AGGCTATAATAATTTAGATATAACCTCAAATGCTAAGCATTACTTTACTATAGACTTACCTACATATGAAAAAATAAAGG ACATAAAAAATATTAAAGGATTTTATACTTTTAAAAATTTAAAGGTAGACAGAAGTGAAGCTTGGAGCCTAGAAAATATG ATAACTACTACGAAAAATATTAGTAGTGGAAAAGAAAAATCATTAGGTTCATTGGAAATGACTATAAGAAATAAGCTTAA AAATAATAAAAATTATACTATAGAGTTTGAAAAAGATGTAGATAATAATATATTAAATATAGAAGAGAATATACCTAAAA ATAACTTAAATGTAAAGTTAACTTTGGATAGGAATATTCAAGAAGACATAAAGGAATTATTAAAAAGTAAATATGGAGAC TATGAACAAATAGGAGTCATTTTAATGGAAAGTAATAGCGGGAATATAAAGGCTATGGTACAAAAGGACGATACTTTACC CAATATAAATATAGGGGCAGAAACTTTAAATGGATTTTTTCCAGGTTCTATTTATAAGACCTTAGTTATGGAAACTATTT TGGAAAAGGATAATGATAATGTAAATAAAAGTTTTTCTTGCAAAGGATTATACGAAGATAATAACAAAGGCATAAATCAT GGTAGTTTAAATATAAATGATGCTTTTGTGGTGTCTTGTAATCATATATTTTCACAATTAGGTATAGAATCAGGTTTTCA GAGTATGCATTCCCTATCTAAGTCTCAGGGACTTTTAGATAAGGTACTAAATTTAGATAGAGAGCAAAGTGGTAAGTTTG AAGTAGAAGAACCTAAAATGGAAAATGGGAGTTTGGGCCTTACTGCTATAGGTCAAAATATGAGAATTACTCCTATAGAA GCAATATCTATTGCAAATACTGTAATAAATGAAGGAATATATATAAAACCAAATATAATAAGTGCATATGTAGATAACGC TAATAAGGTAGTAGAGAAAACAGAATATCAAGGTGAAAGATGCATATCAAAAGAAACGGCTTTAAATGTGAAAAAGGCTA TGAATGGAGTAGTTAATAAGGGAACTGCTAGAGAAGCTTACTTAGAAGATATAGATATAGGTGGGAAAACTGGTTCTACA GAAAGATTAGAGATAGTAAAGGATAGGAATGGTAGAAGTAAAAGAATTAAATATTCTGATGGATGGTTTATTGGATTTTT TAATAAAGAAGATAAATATTATTCTATGGTGGTATTTGTAAAAAATATAAATAAAGATTCTGAAAGTGGTGGAAATACTG CAGCACCTATCTTTAAAGATGTAGTTAAGATATTTCTAGATGAAGAACATTAA
Upstream 100 bases:
>100_bases CGCCATAGATATAATCGTAGGAAATATAAAACAGATGGTTCAAAAATCAGAATAAAAGGATAAAAGTACCTCATTTTGAC AATAATAAAGTTAAAGTGAG
Downstream 100 bases:
>100_bases TACAAGTAAAAGTTATTTTGTTTGATACTTAAAGAAAATTTATATAAAATAAGAACTAAAATTAGTCTCTCTGAATATTA TAATAATAAGCACTATTTGG
Product: penicillin-binding protein 2
Products: NA
Alternate protein names: Sporulation-specific penicillin-binding protein [H]
Number of amino acids: Translated: 550; Mature: 550
Protein sequence:
>550_residues MFFIHKERCYIILLFFLISLGFLNLRLYNLQYKDRERYNVMANMQHSYVETTRDLNYKLLDCNGDNLLKYKEEYKAVIIP KVFIKQNEEENYKEYLKIIEELELYNEGYNNLDITSNAKHYFTIDLPTYEKIKDIKNIKGFYTFKNLKVDRSEAWSLENM ITTTKNISSGKEKSLGSLEMTIRNKLKNNKNYTIEFEKDVDNNILNIEENIPKNNLNVKLTLDRNIQEDIKELLKSKYGD YEQIGVILMESNSGNIKAMVQKDDTLPNINIGAETLNGFFPGSIYKTLVMETILEKDNDNVNKSFSCKGLYEDNNKGINH GSLNINDAFVVSCNHIFSQLGIESGFQSMHSLSKSQGLLDKVLNLDREQSGKFEVEEPKMENGSLGLTAIGQNMRITPIE AISIANTVINEGIYIKPNIISAYVDNANKVVEKTEYQGERCISKETALNVKKAMNGVVNKGTAREAYLEDIDIGGKTGST ERLEIVKDRNGRSKRIKYSDGWFIGFFNKEDKYYSMVVFVKNINKDSESGGNTAAPIFKDVVKIFLDEEH
Sequences:
>Translated_550_residues MFFIHKERCYIILLFFLISLGFLNLRLYNLQYKDRERYNVMANMQHSYVETTRDLNYKLLDCNGDNLLKYKEEYKAVIIP KVFIKQNEEENYKEYLKIIEELELYNEGYNNLDITSNAKHYFTIDLPTYEKIKDIKNIKGFYTFKNLKVDRSEAWSLENM ITTTKNISSGKEKSLGSLEMTIRNKLKNNKNYTIEFEKDVDNNILNIEENIPKNNLNVKLTLDRNIQEDIKELLKSKYGD YEQIGVILMESNSGNIKAMVQKDDTLPNINIGAETLNGFFPGSIYKTLVMETILEKDNDNVNKSFSCKGLYEDNNKGINH GSLNINDAFVVSCNHIFSQLGIESGFQSMHSLSKSQGLLDKVLNLDREQSGKFEVEEPKMENGSLGLTAIGQNMRITPIE AISIANTVINEGIYIKPNIISAYVDNANKVVEKTEYQGERCISKETALNVKKAMNGVVNKGTAREAYLEDIDIGGKTGST ERLEIVKDRNGRSKRIKYSDGWFIGFFNKEDKYYSMVVFVKNINKDSESGGNTAAPIFKDVVKIFLDEEH >Mature_550_residues MFFIHKERCYIILLFFLISLGFLNLRLYNLQYKDRERYNVMANMQHSYVETTRDLNYKLLDCNGDNLLKYKEEYKAVIIP KVFIKQNEEENYKEYLKIIEELELYNEGYNNLDITSNAKHYFTIDLPTYEKIKDIKNIKGFYTFKNLKVDRSEAWSLENM ITTTKNISSGKEKSLGSLEMTIRNKLKNNKNYTIEFEKDVDNNILNIEENIPKNNLNVKLTLDRNIQEDIKELLKSKYGD YEQIGVILMESNSGNIKAMVQKDDTLPNINIGAETLNGFFPGSIYKTLVMETILEKDNDNVNKSFSCKGLYEDNNKGINH GSLNINDAFVVSCNHIFSQLGIESGFQSMHSLSKSQGLLDKVLNLDREQSGKFEVEEPKMENGSLGLTAIGQNMRITPIE AISIANTVINEGIYIKPNIISAYVDNANKVVEKTEYQGERCISKETALNVKKAMNGVVNKGTAREAYLEDIDIGGKTGST ERLEIVKDRNGRSKRIKYSDGWFIGFFNKEDKYYSMVVFVKNINKDSESGGNTAAPIFKDVVKIFLDEEH
Specific function: Penicillin-binding protein with an unknown catalytic activity. May have a specialized role in the morphogenesis of spore cortex, which is a modified form of peptidoglycan. Pore cortex formation is determined primarily by the mother cell [H]
COG id: COG0768
COG function: function code M; Cell division protein FtsI/penicillin-binding protein 2
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PASTA domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR005543 - InterPro: IPR005311 - InterPro: IPR001460 - InterPro: IPR011927 [H]
Pfam domain/function: PF03793 PASTA; PF03717 PBP_dimer; PF00905 Transpeptidase [H]
EC number: NA
Molecular weight: Translated: 63133; Mature: 63133
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFFIHKERCYIILLFFLISLGFLNLRLYNLQYKDRERYNVMANMQHSYVETTRDLNYKLL CEEEECCCHHHHHHHHHHHHHHHEEEEEEEEECCCCHHHHHHCCCHHHHHHHCCCCEEEE DCNGDNLLKYKEEYKAVIIPKVFIKQNEEENYKEYLKIIEELELYNEGYNNLDITSNAKH ECCCCCCCHHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCE YFTIDLPTYEKIKDIKNIKGFYTFKNLKVDRSEAWSLENMITTTKNISSGKEKSLGSLEM EEEEECCCHHHHHHHHHCCCEEEEECEEECCHHHHCHHHHHHHCCCCCCCCCCCCCHHHH TIRNKLKNNKNYTIEFEKDVDNNILNIEENIPKNNLNVKLTLDRNIQEDIKELLKSKYGD HHHHHHCCCCCEEEEECCCCCCCEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCC YEQIGVILMESNSGNIKAMVQKDDTLPNINIGAETLNGFFPGSIYKTLVMETILEKDNDN CHHEEEEEEECCCCCEEEEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCC VNKSFSCKGLYEDNNKGINHGSLNINDAFVVSCNHIFSQLGIESGFQSMHSLSKSQGLLD CCCCEEEEEEECCCCCCCCCCCEECCCEEEEEHHHHHHHHCHHHHHHHHHHHHHHHHHHH KVLNLDREQSGKFEVEEPKMENGSLGLTAIGQNMRITPIEAISIANTVINEGIYIKPNII HHHCCCCCCCCCEEECCCCCCCCCEEEEEECCCCEECCHHHHHHHHHHHCCCEEECCCHH SAYVDNANKVVEKTEYQGERCISKETALNVKKAMNGVVNKGTAREAYLEDIDIGGKTGST EEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCC ERLEIVKDRNGRSKRIKYSDGWFIGFFNKEDKYYSMVVFVKNINKDSESGGNTAAPIFKD CEEEEEECCCCCCCEEEECCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHH VVKIFLDEEH HHHHHCCCCC >Mature Secondary Structure MFFIHKERCYIILLFFLISLGFLNLRLYNLQYKDRERYNVMANMQHSYVETTRDLNYKLL CEEEECCCHHHHHHHHHHHHHHHEEEEEEEEECCCCHHHHHHCCCHHHHHHHCCCCEEEE DCNGDNLLKYKEEYKAVIIPKVFIKQNEEENYKEYLKIIEELELYNEGYNNLDITSNAKH ECCCCCCCHHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCCE YFTIDLPTYEKIKDIKNIKGFYTFKNLKVDRSEAWSLENMITTTKNISSGKEKSLGSLEM EEEEECCCHHHHHHHHHCCCEEEEECEEECCHHHHCHHHHHHHCCCCCCCCCCCCCHHHH TIRNKLKNNKNYTIEFEKDVDNNILNIEENIPKNNLNVKLTLDRNIQEDIKELLKSKYGD HHHHHHCCCCCEEEEECCCCCCCEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCC YEQIGVILMESNSGNIKAMVQKDDTLPNINIGAETLNGFFPGSIYKTLVMETILEKDNDN CHHEEEEEEECCCCCEEEEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCC VNKSFSCKGLYEDNNKGINHGSLNINDAFVVSCNHIFSQLGIESGFQSMHSLSKSQGLLD CCCCEEEEEEECCCCCCCCCCCEECCCEEEEEHHHHHHHHCHHHHHHHHHHHHHHHHHHH KVLNLDREQSGKFEVEEPKMENGSLGLTAIGQNMRITPIEAISIANTVINEGIYIKPNII HHHCCCCCCCCCEEECCCCCCCCCEEEEEECCCCEECCHHHHHHHHHHHCCCEEECCCHH SAYVDNANKVVEKTEYQGERCISKETALNVKKAMNGVVNKGTAREAYLEDIDIGGKTGST EEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCC ERLEIVKDRNGRSKRIKYSDGWFIGFFNKEDKYYSMVVFVKNINKDSESGGNTAAPIFKD CEEEEEECCCCCCCEEEECCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHH VVKIFLDEEH HHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8289242; 9384377; 8244929; 8436954 [H]