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The map label for this gene is ypdC [C]

Identifier: 28210646

GI number: 28210646

Start: 995774

End: 996511

Strand: Direct

Name: ypdC [C]

Synonym: CTC00935

Alternate gene names: 28210646

Gene position: 995774-996511 (Clockwise)

Preceding gene: 28210645

Following gene: 28210647

Centisome position: 35.57

GC content: 24.53

Gene sequence:

>738_bases
GTGTGTAGAGTAGTGCTTGCCGATGATGAACATTTAGAAATTGAAGCTCTAAAAATAATTATAAATGAAAAAGTTAAAAA
TGTAGATATTGTTGGTGAGGCATATAACGGTGAAGATGTTATTAAGATAAATGAATCATTAAACCCAGATGTGATTTTTA
TGGATATAATTATGCCTGGCATAGATGGACTCGAAGTAGCTCAAATTATAAAGGAAAAAGATAGTAGTAAAAAAATTGTA
TTAATGAGTGTATATGACGACTTTGAACTTGTTCAAAGAGCATTAAAAATAAAAGTTGATGATTACTTACTAAAACCCAT
TAAACCCGAGAAAGTAATAATGCTATTAAAAGAATTTATAGATGAAGATAAAATTTTTAACTCTGAAAATAATATTTCAG
TCTATAAAATAGATGAATTAGAATGTGCTTTAAGTTATATAGAAAAAAACTTTAGAAAGAATATAACACTAAATGAGGTA
GCTAATTACGTGAATTTTAGCAGTACCTATTTAAGTAAGCTTTTTAAAAATAATATAGGCATTAATTTTAATAAATATAT
AACTAAAAGAAGAATAAAGGAAGCTACATTAATATTAGAAAATAAAAATATTAGTGTAAATGATTTAGCATTCCAAATAG
GATACAATGAACCTAGTTATTTTTGTAAAGTTTTTAAAAAAGAAAAAGGAGTAACTCCATTAGAGTATAGAAAAAAGGTG
AATAATAAAAAAGTATAA

Upstream 100 bases:

>100_bases
TTAATGTTGGAACTATGATAAAACTTAAATTTCCGTTTACTTAAAATATAAACTTTTTTGCAAATATGTATAATGGAATT
GCATATGAGGGGGAATTAAT

Downstream 100 bases:

>100_bases
TTATAGAATAAAATATTACTATAAAGTAGAAGAAAAGATGAATTATGAAGTGAATTTTGAATAAATATTTATAGAGATTA
AATAAATAAGTGTTAAAGAA

Product: transcriptional regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MCRVVLADDEHLEIEALKIIINEKVKNVDIVGEAYNGEDVIKINESLNPDVIFMDIIMPGIDGLEVAQIIKEKDSSKKIV
LMSVYDDFELVQRALKIKVDDYLLKPIKPEKVIMLLKEFIDEDKIFNSENNISVYKIDELECALSYIEKNFRKNITLNEV
ANYVNFSSTYLSKLFKNNIGINFNKYITKRRIKEATLILENKNISVNDLAFQIGYNEPSYFCKVFKKEKGVTPLEYRKKV
NNKKV

Sequences:

>Translated_245_residues
MCRVVLADDEHLEIEALKIIINEKVKNVDIVGEAYNGEDVIKINESLNPDVIFMDIIMPGIDGLEVAQIIKEKDSSKKIV
LMSVYDDFELVQRALKIKVDDYLLKPIKPEKVIMLLKEFIDEDKIFNSENNISVYKIDELECALSYIEKNFRKNITLNEV
ANYVNFSSTYLSKLFKNNIGINFNKYITKRRIKEATLILENKNISVNDLAFQIGYNEPSYFCKVFKKEKGVTPLEYRKKV
NNKKV
>Mature_245_residues
MCRVVLADDEHLEIEALKIIINEKVKNVDIVGEAYNGEDVIKINESLNPDVIFMDIIMPGIDGLEVAQIIKEKDSSKKIV
LMSVYDDFELVQRALKIKVDDYLLKPIKPEKVIMLLKEFIDEDKIFNSENNISVYKIDELECALSYIEKNFRKNITLNEV
ANYVNFSSTYLSKLFKNNIGINFNKYITKRRIKEATLILENKNISVNDLAFQIGYNEPSYFCKVFKKEKGVTPLEYRKKV
NNKKV

Specific function: Probable member of the two-component regulatory system SE_0166/SE_0165 [H]

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788725, Length=97, Percent_Identity=29.8969072164948, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788222, Length=129, Percent_Identity=30.2325581395349, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082052, Length=175, Percent_Identity=30.2857142857143, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790391, Length=98, Percent_Identity=30.6122448979592, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790559, Length=116, Percent_Identity=26.7241379310345, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787473, Length=117, Percent_Identity=39.3162393162393, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787987, Length=99, Percent_Identity=29.2929292929293, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00165 HTH_AraC; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28418; Mature: 28418

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCRVVLADDEHLEIEALKIIINEKVKNVDIVGEAYNGEDVIKINESLNPDVIFMDIIMPG
CEEEEECCCCCCCHHHHHEEHHCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCC
IDGLEVAQIIKEKDSSKKIVLMSVYDDFELVQRALKIKVDDYLLKPIKPEKVIMLLKEFI
CCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHH
DEDKIFNSENNISVYKIDELECALSYIEKNFRKNITLNEVANYVNFSSTYLSKLFKNNIG
CHHHEECCCCCEEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHCCCC
INFNKYITKRRIKEATLILENKNISVNDLAFQIGYNEPSYFCKVFKKEKGVTPLEYRKKV
CCHHHHHHHHHHHHEEEEEECCCCEEEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHC
NNKKV
CCCCC
>Mature Secondary Structure
MCRVVLADDEHLEIEALKIIINEKVKNVDIVGEAYNGEDVIKINESLNPDVIFMDIIMPG
CEEEEECCCCCCCHHHHHEEHHCCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCC
IDGLEVAQIIKEKDSSKKIVLMSVYDDFELVQRALKIKVDDYLLKPIKPEKVIMLLKEFI
CCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHH
DEDKIFNSENNISVYKIDELECALSYIEKNFRKNITLNEVANYVNFSSTYLSKLFKNNIG
CHHHEECCCCCEEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHCCCC
INFNKYITKRRIKEATLILENKNISVNDLAFQIGYNEPSYFCKVFKKEKGVTPLEYRKKV
CCHHHHHHHHHHHHEEEEEECCCCEEEEEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHC
NNKKV
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12950922 [H]