Definition Clostridium tetani E88 chromosome, complete genome.
Accession NC_004557
Length 2,799,251

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The map label for this gene is pucR [H]

Identifier: 28210636

GI number: 28210636

Start: 983277

End: 984467

Strand: Direct

Name: pucR [H]

Synonym: CTC00925

Alternate gene names: 28210636

Gene position: 983277-984467 (Clockwise)

Preceding gene: 28210635

Following gene: 28210637

Centisome position: 35.13

GC content: 26.28

Gene sequence:

>1191_bases
ATGGCAACAGTGAGGGAAATTTTGGCGATACCTAAACTATCAAATTTTAAAGTAGTAGCGGGAGCAAAAGGATTAGATAA
AAATGTAAGGCATGTAACTGTTATGGAAGTTCCTAATATAGTTAAATGGATGAGGGGGGATGATTTTTTAATTACTAGTT
TATATTCAGTAAAAGATGATGTGAAAAAGCAGTGTGAAATCATAAAAGATTTATCAAGTTCATCTTGTTCATGTGTTGCT
ATAAAAGTAGGAGAATATATTAAAAAAATTCCAAAGGAGATAAAATATATTGCTAATAAATGTGAAATGCCTTTAATAGA
GATACCTTATGAATTATCCTATATAGATATTATAATGAATGTTATGCATTTGATCTTTGAAGAAGGAGATGCTGATTCAA
TAATTCAAAAATATATAAAAGATATAATATTTGATATTTATGAGGATGAGAAACTTATGGTACAAAGAGGAAACTTATTA
GGTATAGATGTTAATAGAGACTATTTTGTAGCATTTACGCTAAAATTTGATGAGAATGAGGAAATAAATAACAATCACAT
GAATTGTTTAAAAAGAGTAGCTAAAGAAATTTCAAAATATGTAACAAACAATAAAAACTTTGAATTGAGTCCCTATATAG
ACGCGGATAGAAGTGTATCTATAATTTTTCAATCATCTTTAAAAAGCAACATAGAAAAAATGTTACCATACATAGAGAAA
GGGGCTTTATTACAGGTAGAACATTATTTGAAAGGTAAAAATTTATTTATAGGTGTTGGAAGCATTGAAACTAATATAGA
GGGGATAAAGAATTCTTATTTTAATTCTATAAAAGCTATAAAATCAGGGAACATATTTAAAGAGAAGAATAAAGTATTTT
ACTATAAAGATATGGAAATATATTGTATTCTAAAAGAAGTTATTGGAGAATGTACAGAACCTTTAATGAATTTAGTCTTA
AAAAATGTAAAGGACAAGGATTTACTAGATACATTGATAAAGTACTATGAATGTAATGCTAATTTAGATGAAACTGCTAT
GGAACTATTTATACATAAAAATACTGTTAAATACAGATTACAAAAGATAAAAGAGATAACAGGATTAGATGTAAAAGTTC
ATGAGGATAGCTTTAAATTATACTTAGCTGTGCTTGCAAATAAGATTTTGTTAAATTCAACAAAAAAATGA

Upstream 100 bases:

>100_bases
ATATATTTCAATAACTAGATAGAAGTATTATTATGCTAATATCTAGTTATTTTGATTTTTAATTAGATTGTAGAGGTGAA
TTAAAAAGGGGGGGATTATT

Downstream 100 bases:

>100_bases
GTGAATATTTAATTAATAGAACATAGAAAACAGGTATTTACATTGTTAAAATGTAGATAATATGAGATTAATAGATAAAG
GTGAGGTTATAAAATGATTT

Product: transcriptional regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MATVREILAIPKLSNFKVVAGAKGLDKNVRHVTVMEVPNIVKWMRGDDFLITSLYSVKDDVKKQCEIIKDLSSSSCSCVA
IKVGEYIKKIPKEIKYIANKCEMPLIEIPYELSYIDIIMNVMHLIFEEGDADSIIQKYIKDIIFDIYEDEKLMVQRGNLL
GIDVNRDYFVAFTLKFDENEEINNNHMNCLKRVAKEISKYVTNNKNFELSPYIDADRSVSIIFQSSLKSNIEKMLPYIEK
GALLQVEHYLKGKNLFIGVGSIETNIEGIKNSYFNSIKAIKSGNIFKEKNKVFYYKDMEIYCILKEVIGECTEPLMNLVL
KNVKDKDLLDTLIKYYECNANLDETAMELFIHKNTVKYRLQKIKEITGLDVKVHEDSFKLYLAVLANKILLNSTKK

Sequences:

>Translated_396_residues
MATVREILAIPKLSNFKVVAGAKGLDKNVRHVTVMEVPNIVKWMRGDDFLITSLYSVKDDVKKQCEIIKDLSSSSCSCVA
IKVGEYIKKIPKEIKYIANKCEMPLIEIPYELSYIDIIMNVMHLIFEEGDADSIIQKYIKDIIFDIYEDEKLMVQRGNLL
GIDVNRDYFVAFTLKFDENEEINNNHMNCLKRVAKEISKYVTNNKNFELSPYIDADRSVSIIFQSSLKSNIEKMLPYIEK
GALLQVEHYLKGKNLFIGVGSIETNIEGIKNSYFNSIKAIKSGNIFKEKNKVFYYKDMEIYCILKEVIGECTEPLMNLVL
KNVKDKDLLDTLIKYYECNANLDETAMELFIHKNTVKYRLQKIKEITGLDVKVHEDSFKLYLAVLANKILLNSTKK
>Mature_395_residues
ATVREILAIPKLSNFKVVAGAKGLDKNVRHVTVMEVPNIVKWMRGDDFLITSLYSVKDDVKKQCEIIKDLSSSSCSCVAI
KVGEYIKKIPKEIKYIANKCEMPLIEIPYELSYIDIIMNVMHLIFEEGDADSIIQKYIKDIIFDIYEDEKLMVQRGNLLG
IDVNRDYFVAFTLKFDENEEINNNHMNCLKRVAKEISKYVTNNKNFELSPYIDADRSVSIIFQSSLKSNIEKMLPYIEKG
ALLQVEHYLKGKNLFIGVGSIETNIEGIKNSYFNSIKAIKSGNIFKEKNKVFYYKDMEIYCILKEVIGECTEPLMNLVLK
NVKDKDLLDTLIKYYECNANLDETAMELFIHKNTVKYRLQKIKEITGLDVKVHEDSFKLYLAVLANKILLNSTKK

Specific function: Activates the expression of pucFG, pucH, pucI, pucJKLM and guaD, while it represses pucABCDE and its own expression [H]

COG id: COG2508

COG function: function code TQ; Regulator of polyketide synthase expression

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012914 [H]

Pfam domain/function: PF07905 PucR [H]

EC number: NA

Molecular weight: Translated: 45653; Mature: 45522

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATVREILAIPKLSNFKVVAGAKGLDKNVRHVTVMEVPNIVKWMRGDDFLITSLYSVKDD
CCCHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEECCHHHHHHHCCCCHHHHHHHHHHHH
VKKQCEIIKDLSSSSCSCVAIKVGEYIKKIPKEIKYIANKCEMPLIEIPYELSYIDIIMN
HHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHH
VMHLIFEEGDADSIIQKYIKDIIFDIYEDEKLMVQRGNLLGIDVNRDYFVAFTLKFDENE
HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCEEEEEEEEECCCC
EINNNHMNCLKRVAKEISKYVTNNKNFELSPYIDADRSVSIIFQSSLKSNIEKMLPYIEK
CCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHC
GALLQVEHYLKGKNLFIGVGSIETNIEGIKNSYFNSIKAIKSGNIFKEKNKVFYYKDMEI
CCEEEEHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCEEEEECCHH
YCILKEVIGECTEPLMNLVLKNVKDKDLLDTLIKYYECNANLDETAMELFIHKNTVKYRL
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
QKIKEITGLDVKVHEDSFKLYLAVLANKILLNSTKK
HHHHHHHCCEEEEECCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ATVREILAIPKLSNFKVVAGAKGLDKNVRHVTVMEVPNIVKWMRGDDFLITSLYSVKDD
CCHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEECCHHHHHHHCCCCHHHHHHHHHHHH
VKKQCEIIKDLSSSSCSCVAIKVGEYIKKIPKEIKYIANKCEMPLIEIPYELSYIDIIMN
HHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHH
VMHLIFEEGDADSIIQKYIKDIIFDIYEDEKLMVQRGNLLGIDVNRDYFVAFTLKFDENE
HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCEEEEEEEEECCCC
EINNNHMNCLKRVAKEISKYVTNNKNFELSPYIDADRSVSIIFQSSLKSNIEKMLPYIEK
CCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHC
GALLQVEHYLKGKNLFIGVGSIETNIEGIKNSYFNSIKAIKSGNIFKEKNKVFYYKDMEI
CCEEEEHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCEEEEECCHH
YCILKEVIGECTEPLMNLVLKNVKDKDLLDTLIKYYECNANLDETAMELFIHKNTVKYRL
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
QKIKEITGLDVKVHEDSFKLYLAVLANKILLNSTKK
HHHHHHHCCEEEEECCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 11344136; 12029039 [H]