| Definition | Clostridium tetani E88 chromosome, complete genome. |
|---|---|
| Accession | NC_004557 |
| Length | 2,799,251 |
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The map label for this gene is pucR [H]
Identifier: 28210636
GI number: 28210636
Start: 983277
End: 984467
Strand: Direct
Name: pucR [H]
Synonym: CTC00925
Alternate gene names: 28210636
Gene position: 983277-984467 (Clockwise)
Preceding gene: 28210635
Following gene: 28210637
Centisome position: 35.13
GC content: 26.28
Gene sequence:
>1191_bases ATGGCAACAGTGAGGGAAATTTTGGCGATACCTAAACTATCAAATTTTAAAGTAGTAGCGGGAGCAAAAGGATTAGATAA AAATGTAAGGCATGTAACTGTTATGGAAGTTCCTAATATAGTTAAATGGATGAGGGGGGATGATTTTTTAATTACTAGTT TATATTCAGTAAAAGATGATGTGAAAAAGCAGTGTGAAATCATAAAAGATTTATCAAGTTCATCTTGTTCATGTGTTGCT ATAAAAGTAGGAGAATATATTAAAAAAATTCCAAAGGAGATAAAATATATTGCTAATAAATGTGAAATGCCTTTAATAGA GATACCTTATGAATTATCCTATATAGATATTATAATGAATGTTATGCATTTGATCTTTGAAGAAGGAGATGCTGATTCAA TAATTCAAAAATATATAAAAGATATAATATTTGATATTTATGAGGATGAGAAACTTATGGTACAAAGAGGAAACTTATTA GGTATAGATGTTAATAGAGACTATTTTGTAGCATTTACGCTAAAATTTGATGAGAATGAGGAAATAAATAACAATCACAT GAATTGTTTAAAAAGAGTAGCTAAAGAAATTTCAAAATATGTAACAAACAATAAAAACTTTGAATTGAGTCCCTATATAG ACGCGGATAGAAGTGTATCTATAATTTTTCAATCATCTTTAAAAAGCAACATAGAAAAAATGTTACCATACATAGAGAAA GGGGCTTTATTACAGGTAGAACATTATTTGAAAGGTAAAAATTTATTTATAGGTGTTGGAAGCATTGAAACTAATATAGA GGGGATAAAGAATTCTTATTTTAATTCTATAAAAGCTATAAAATCAGGGAACATATTTAAAGAGAAGAATAAAGTATTTT ACTATAAAGATATGGAAATATATTGTATTCTAAAAGAAGTTATTGGAGAATGTACAGAACCTTTAATGAATTTAGTCTTA AAAAATGTAAAGGACAAGGATTTACTAGATACATTGATAAAGTACTATGAATGTAATGCTAATTTAGATGAAACTGCTAT GGAACTATTTATACATAAAAATACTGTTAAATACAGATTACAAAAGATAAAAGAGATAACAGGATTAGATGTAAAAGTTC ATGAGGATAGCTTTAAATTATACTTAGCTGTGCTTGCAAATAAGATTTTGTTAAATTCAACAAAAAAATGA
Upstream 100 bases:
>100_bases ATATATTTCAATAACTAGATAGAAGTATTATTATGCTAATATCTAGTTATTTTGATTTTTAATTAGATTGTAGAGGTGAA TTAAAAAGGGGGGGATTATT
Downstream 100 bases:
>100_bases GTGAATATTTAATTAATAGAACATAGAAAACAGGTATTTACATTGTTAAAATGTAGATAATATGAGATTAATAGATAAAG GTGAGGTTATAAAATGATTT
Product: transcriptional regulatory protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 396; Mature: 395
Protein sequence:
>396_residues MATVREILAIPKLSNFKVVAGAKGLDKNVRHVTVMEVPNIVKWMRGDDFLITSLYSVKDDVKKQCEIIKDLSSSSCSCVA IKVGEYIKKIPKEIKYIANKCEMPLIEIPYELSYIDIIMNVMHLIFEEGDADSIIQKYIKDIIFDIYEDEKLMVQRGNLL GIDVNRDYFVAFTLKFDENEEINNNHMNCLKRVAKEISKYVTNNKNFELSPYIDADRSVSIIFQSSLKSNIEKMLPYIEK GALLQVEHYLKGKNLFIGVGSIETNIEGIKNSYFNSIKAIKSGNIFKEKNKVFYYKDMEIYCILKEVIGECTEPLMNLVL KNVKDKDLLDTLIKYYECNANLDETAMELFIHKNTVKYRLQKIKEITGLDVKVHEDSFKLYLAVLANKILLNSTKK
Sequences:
>Translated_396_residues MATVREILAIPKLSNFKVVAGAKGLDKNVRHVTVMEVPNIVKWMRGDDFLITSLYSVKDDVKKQCEIIKDLSSSSCSCVA IKVGEYIKKIPKEIKYIANKCEMPLIEIPYELSYIDIIMNVMHLIFEEGDADSIIQKYIKDIIFDIYEDEKLMVQRGNLL GIDVNRDYFVAFTLKFDENEEINNNHMNCLKRVAKEISKYVTNNKNFELSPYIDADRSVSIIFQSSLKSNIEKMLPYIEK GALLQVEHYLKGKNLFIGVGSIETNIEGIKNSYFNSIKAIKSGNIFKEKNKVFYYKDMEIYCILKEVIGECTEPLMNLVL KNVKDKDLLDTLIKYYECNANLDETAMELFIHKNTVKYRLQKIKEITGLDVKVHEDSFKLYLAVLANKILLNSTKK >Mature_395_residues ATVREILAIPKLSNFKVVAGAKGLDKNVRHVTVMEVPNIVKWMRGDDFLITSLYSVKDDVKKQCEIIKDLSSSSCSCVAI KVGEYIKKIPKEIKYIANKCEMPLIEIPYELSYIDIIMNVMHLIFEEGDADSIIQKYIKDIIFDIYEDEKLMVQRGNLLG IDVNRDYFVAFTLKFDENEEINNNHMNCLKRVAKEISKYVTNNKNFELSPYIDADRSVSIIFQSSLKSNIEKMLPYIEKG ALLQVEHYLKGKNLFIGVGSIETNIEGIKNSYFNSIKAIKSGNIFKEKNKVFYYKDMEIYCILKEVIGECTEPLMNLVLK NVKDKDLLDTLIKYYECNANLDETAMELFIHKNTVKYRLQKIKEITGLDVKVHEDSFKLYLAVLANKILLNSTKK
Specific function: Activates the expression of pucFG, pucH, pucI, pucJKLM and guaD, while it represses pucABCDE and its own expression [H]
COG id: COG2508
COG function: function code TQ; Regulator of polyketide synthase expression
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CdaR family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012914 [H]
Pfam domain/function: PF07905 PucR [H]
EC number: NA
Molecular weight: Translated: 45653; Mature: 45522
Theoretical pI: Translated: 7.71; Mature: 7.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATVREILAIPKLSNFKVVAGAKGLDKNVRHVTVMEVPNIVKWMRGDDFLITSLYSVKDD CCCHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEECCHHHHHHHCCCCHHHHHHHHHHHH VKKQCEIIKDLSSSSCSCVAIKVGEYIKKIPKEIKYIANKCEMPLIEIPYELSYIDIIMN HHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHH VMHLIFEEGDADSIIQKYIKDIIFDIYEDEKLMVQRGNLLGIDVNRDYFVAFTLKFDENE HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCEEEEEEEEECCCC EINNNHMNCLKRVAKEISKYVTNNKNFELSPYIDADRSVSIIFQSSLKSNIEKMLPYIEK CCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHC GALLQVEHYLKGKNLFIGVGSIETNIEGIKNSYFNSIKAIKSGNIFKEKNKVFYYKDMEI CCEEEEHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCEEEEECCHH YCILKEVIGECTEPLMNLVLKNVKDKDLLDTLIKYYECNANLDETAMELFIHKNTVKYRL HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH QKIKEITGLDVKVHEDSFKLYLAVLANKILLNSTKK HHHHHHHCCEEEEECCHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure ATVREILAIPKLSNFKVVAGAKGLDKNVRHVTVMEVPNIVKWMRGDDFLITSLYSVKDD CCHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEECCHHHHHHHCCCCHHHHHHHHHHHH VKKQCEIIKDLSSSSCSCVAIKVGEYIKKIPKEIKYIANKCEMPLIEIPYELSYIDIIMN HHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHH VMHLIFEEGDADSIIQKYIKDIIFDIYEDEKLMVQRGNLLGIDVNRDYFVAFTLKFDENE HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCEEEEEEEEECCCC EINNNHMNCLKRVAKEISKYVTNNKNFELSPYIDADRSVSIIFQSSLKSNIEKMLPYIEK CCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHC GALLQVEHYLKGKNLFIGVGSIETNIEGIKNSYFNSIKAIKSGNIFKEKNKVFYYKDMEI CCEEEEHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCEEEEECCHH YCILKEVIGECTEPLMNLVLKNVKDKDLLDTLIKYYECNANLDETAMELFIHKNTVKYRL HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH QKIKEITGLDVKVHEDSFKLYLAVLANKILLNSTKK HHHHHHHCCEEEEECCHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377; 11344136; 12029039 [H]