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The map label for this gene is rbsC [H]

Identifier: 28210617

GI number: 28210617

Start: 960491

End: 961477

Strand: Direct

Name: rbsC [H]

Synonym: CTC00906

Alternate gene names: 28210617

Gene position: 960491-961477 (Clockwise)

Preceding gene: 28210616

Following gene: 28210618

Centisome position: 34.31

GC content: 32.42

Gene sequence:

>987_bases
GTGATAGGAGGAAAAAATATGACTGAATTAAGCAGAGAAAATAATAAAGTTAGTAAAAAGGATATTATACAAAAGTTTAG
TACAGTTTTGATTTTAGTAATGCTGATGATTGCTCTAACAGTTATGAAACCTGTTTTTATGACTAGAAATAATATTATGA
CAATCTTACTTCAAACAGCTGTTATTGCGGTTATAGCTATAGGTGAAACTTTAGTAATAATAACATCTGGTATAGATCTT
TCTGTAGGATCTTTAGTTGCAATCTCAGGTGTTGCTAGTGCTATTTTTATGAGAGATGGTATGAATATGATCCTAGCTTG
CATGCTTGGTATACTTATAAGTACAGCTTGTGGATTAATTAATGGATTTATAGTAGCTAAAGGAAATATTCCAGAGTTTA
TAGTAACACTTGGTATGATGAGTATAGTTAGAGGTGCTTCATTAGTTGTTACACAAGGCTTACCTGTTTCAGGATTACCA
GATGGCTTTCAAGTATTAGGTACTGGAAAATTATTTGGGGTTATTCCAGTTCCAGCAGTGATAATGATTATTTTAGCCAT
GATTTTTACCCTGATATTAAGAAAAACACTTATAGGAAGATATACTTATGCTATAGGAAGTAATGAAGAAGCTACAAAGC
TTTCAGGAATAAATACAGATAGAGTTAAAATTACGGTTTATGGATTAAGTGGATTATTAGCAGGAATAGCTGGTATATTA
CTTACAGCAAGACTTATATCTGCACAACCAACAGCTGGGACAGGCTATGAATTAGATGCTATAGCTGCGGCTGTTATTGG
AGGAGCTAGTCTTGCAGGTGGAGAAGGAACTATAACAGGAACTATAATAGGGGCTTTAATAATGGGTGTATTAAGAAATG
GACTTAACCTTTTAAATGTTTCAGCATTTTGGCAACAAATAGTTATAGGAGCTATAATTATAGCTGCTGTATATGGAGAT
AAGTTGAAAAATAAAAAATTAAATTAG

Upstream 100 bases:

>100_bases
TAGTTGTCATGAGTAATAGCTGTGTGTCTGGTTCTATTGAAAATGATATACAAAATAAAAAAGATGTAGAAGAAAAAATA
ATGAAATATGCAATAGGAAA

Downstream 100 bases:

>100_bases
TTTATGTTATTTAAATATAATATAAAAATAAAATAATTTTAGGGGGAATATCAAATGTTAAAGAAAAGATTAGCTTTAAT
AACAATGTCAGTAATGTTGT

Product: ribose transport system permease protein rbsC

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MIGGKNMTELSRENNKVSKKDIIQKFSTVLILVMLMIALTVMKPVFMTRNNIMTILLQTAVIAVIAIGETLVIITSGIDL
SVGSLVAISGVASAIFMRDGMNMILACMLGILISTACGLINGFIVAKGNIPEFIVTLGMMSIVRGASLVVTQGLPVSGLP
DGFQVLGTGKLFGVIPVPAVIMIILAMIFTLILRKTLIGRYTYAIGSNEEATKLSGINTDRVKITVYGLSGLLAGIAGIL
LTARLISAQPTAGTGYELDAIAAAVIGGASLAGGEGTITGTIIGALIMGVLRNGLNLLNVSAFWQQIVIGAIIIAAVYGD
KLKNKKLN

Sequences:

>Translated_328_residues
MIGGKNMTELSRENNKVSKKDIIQKFSTVLILVMLMIALTVMKPVFMTRNNIMTILLQTAVIAVIAIGETLVIITSGIDL
SVGSLVAISGVASAIFMRDGMNMILACMLGILISTACGLINGFIVAKGNIPEFIVTLGMMSIVRGASLVVTQGLPVSGLP
DGFQVLGTGKLFGVIPVPAVIMIILAMIFTLILRKTLIGRYTYAIGSNEEATKLSGINTDRVKITVYGLSGLLAGIAGIL
LTARLISAQPTAGTGYELDAIAAAVIGGASLAGGEGTITGTIIGALIMGVLRNGLNLLNVSAFWQQIVIGAIIIAAVYGD
KLKNKKLN
>Mature_328_residues
MIGGKNMTELSRENNKVSKKDIIQKFSTVLILVMLMIALTVMKPVFMTRNNIMTILLQTAVIAVIAIGETLVIITSGIDL
SVGSLVAISGVASAIFMRDGMNMILACMLGILISTACGLINGFIVAKGNIPEFIVTLGMMSIVRGASLVVTQGLPVSGLP
DGFQVLGTGKLFGVIPVPAVIMIILAMIFTLILRKTLIGRYTYAIGSNEEATKLSGINTDRVKITVYGLSGLLAGIAGIL
LTARLISAQPTAGTGYELDAIAAAVIGGASLAGGEGTITGTIIGALIMGVLRNGLNLLNVSAFWQQIVIGAIIIAAVYGD
KLKNKKLN

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=324, Percent_Identity=48.4567901234568, Blast_Score=252, Evalue=2e-68,
Organism=Escherichia coli, GI1790524, Length=323, Percent_Identity=37.7708978328173, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI1788896, Length=321, Percent_Identity=38.9408099688474, Blast_Score=189, Evalue=3e-49,
Organism=Escherichia coli, GI145693152, Length=312, Percent_Identity=38.1410256410256, Blast_Score=184, Evalue=6e-48,
Organism=Escherichia coli, GI1789992, Length=132, Percent_Identity=50, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI87082395, Length=276, Percent_Identity=35.8695652173913, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1787793, Length=282, Percent_Identity=33.3333333333333, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI1788471, Length=331, Percent_Identity=35.0453172205438, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1787794, Length=304, Percent_Identity=29.2763157894737, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI145693214, Length=242, Percent_Identity=38.4297520661157, Blast_Score=111, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34149; Mature: 34149

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGGKNMTELSRENNKVSKKDIIQKFSTVLILVMLMIALTVMKPVFMTRNNIMTILLQTA
CCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIAVIAIGETLVIITSGIDLSVGSLVAISGVASAIFMRDGMNMILACMLGILISTACGLI
HHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
NGFIVAKGNIPEFIVTLGMMSIVRGASLVVTQGLPVSGLPDGFQVLGTGKLFGVIPVPAV
HCEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECCCEEEECCHHHH
IMIILAMIFTLILRKTLIGRYTYAIGSNEEATKLSGINTDRVKITVYGLSGLLAGIAGIL
HHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHCCCCCCEEEEEEEEHHHHHHHHHHHH
LTARLISAQPTAGTGYELDAIAAAVIGGASLAGGEGTITGTIIGALIMGVLRNGLNLLNV
HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH
SAFWQQIVIGAIIIAAVYGDKLKNKKLN
HHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MIGGKNMTELSRENNKVSKKDIIQKFSTVLILVMLMIALTVMKPVFMTRNNIMTILLQTA
CCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIAVIAIGETLVIITSGIDLSVGSLVAISGVASAIFMRDGMNMILACMLGILISTACGLI
HHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
NGFIVAKGNIPEFIVTLGMMSIVRGASLVVTQGLPVSGLPDGFQVLGTGKLFGVIPVPAV
HCEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEECCCEEEECCHHHH
IMIILAMIFTLILRKTLIGRYTYAIGSNEEATKLSGINTDRVKITVYGLSGLLAGIAGIL
HHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHCCCCCCEEEEEEEEHHHHHHHHHHHH
LTARLISAQPTAGTGYELDAIAAAVIGGASLAGGEGTITGTIIGALIMGVLRNGLNLLNV
HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH
SAFWQQIVIGAIIIAAVYGDKLKNKKLN
HHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]