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The map label for this gene is rplY

Identifier: 28210591

GI number: 28210591

Start: 933871

End: 934452

Strand: Direct

Name: rplY

Synonym: CTC00878

Alternate gene names: 28210591

Gene position: 933871-934452 (Clockwise)

Preceding gene: 28210590

Following gene: 28210595

Centisome position: 33.36

GC content: 27.66

Gene sequence:

>582_bases
ATGGCAGAGATTTTAATTGCAACAGAAAGAAATGAAAAAGGAAAAACAGCAAGAAAAAAAGGTTTTATACCAGGAATAAT
TTATGGAAAAGATAGAGAAGGTCAGAGCATAAATTTTGAAAGAGGAAAACTTATAGCTTTTCTTAAAGAAAAGGGAGAAA
AATCAAAAATGAACTTTCAATTAAATGGTGAAAATAAACAGGGGATCATAAAAGAAGTTGGAAGGGATGCTGTGACATCA
AGTATAATACATATAGATATACAAGAGGTATCAGCATTAGAAAAGGTAAGATGGACTATTCCTATATTCTTTGAAGGAAG
AGAACAATTAAAGAAAAAAGAACTTTATATACAAGTATATTTAACAGAGGTAGAAGTAGAAGGAAAAGCTTCTGACATAC
CAAATAATATTACATTAAATGTTGGTAATTTAGAACTTGGTGAAGAGGTAAAAGTTAAAGATTTAAATATTGGAAGCAAT
ATAAGGATATTTAATGAATTAGAAAATACTATAGCTATAATATCTAGTTCACAGAATACAAATAAAAATATTGAAGAAGA
AGATCCATCTGAAGTTGAATAA

Upstream 100 bases:

>100_bases
TAATATTTACAAGGGGATATTTACAAGATTATAATGTAACTCAATTAAAAATCATAATATTTAATATTTAATTGTAGTTA
ATACTCAAGGAGGTTTTATT

Downstream 100 bases:

>100_bases
AAATAATGTTAAATAAAAAAGCCCTTTGAGGGGCTTTTTTACGTTAAAATAGAAAGATGGGAGGAGTAGTTATTGAGCCA
TTAGTCATTCATTAAACTAA

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MAEILIATERNEKGKTARKKGFIPGIIYGKDREGQSINFERGKLIAFLKEKGEKSKMNFQLNGENKQGIIKEVGRDAVTS
SIIHIDIQEVSALEKVRWTIPIFFEGREQLKKKELYIQVYLTEVEVEGKASDIPNNITLNVGNLELGEEVKVKDLNIGSN
IRIFNELENTIAIISSSQNTNKNIEEEDPSEVE

Sequences:

>Translated_193_residues
MAEILIATERNEKGKTARKKGFIPGIIYGKDREGQSINFERGKLIAFLKEKGEKSKMNFQLNGENKQGIIKEVGRDAVTS
SIIHIDIQEVSALEKVRWTIPIFFEGREQLKKKELYIQVYLTEVEVEGKASDIPNNITLNVGNLELGEEVKVKDLNIGSN
IRIFNELENTIAIISSSQNTNKNIEEEDPSEVE
>Mature_192_residues
AEILIATERNEKGKTARKKGFIPGIIYGKDREGQSINFERGKLIAFLKEKGEKSKMNFQLNGENKQGIIKEVGRDAVTSS
IIHIDIQEVSALEKVRWTIPIFFEGREQLKKKELYIQVYLTEVEVEGKASDIPNNITLNVGNLELGEEVKVKDLNIGSNI
RIFNELENTIAIISSSQNTNKNIEEEDPSEVE

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL25_CLOTE (Q896W8)

Other databases:

- EMBL:   AE015927
- RefSeq:   NP_781535.1
- ProteinModelPortal:   Q896W8
- SMR:   Q896W8
- GeneID:   1060223
- GenomeReviews:   AE015927_GR
- KEGG:   ctc:CTC00878
- NMPDR:   fig|212717.1.peg.757
- OMA:   NDKKINC
- ProtClustDB:   PRK05618
- BioCyc:   CTET212717:CTC_00878-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01334
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- Gene3D:   G3DSA:2.170.120.20
- ProDom:   PD012503
- TIGRFAMs:   TIGR00731

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 21806; Mature: 21675

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEILIATERNEKGKTARKKGFIPGIIYGKDREGQSINFERGKLIAFLKEKGEKSKMNFQ
CCEEEEEECCCCCCCCHHHCCCCCEEEECCCCCCCEECCCCCEEEEEEECCCCCCEEEEE
LNGENKQGIIKEVGRDAVTSSIIHIDIQEVSALEKVRWTIPIFFEGREQLKKKELYIQVY
ECCCCCCCHHHHHCCHHHHHEEEEEEHHHHHHHHHEEEEEEEEECCHHHHCCEEEEEEEE
LTEVEVEGKASDIPNNITLNVGNLELGEEVKVKDLNIGSNIRIFNELENTIAIISSSQNT
EEEEEECCCCCCCCCEEEEEECCEECCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCC
NKNIEEEDPSEVE
CCCCCCCCCCCCC
>Mature Secondary Structure 
AEILIATERNEKGKTARKKGFIPGIIYGKDREGQSINFERGKLIAFLKEKGEKSKMNFQ
CEEEEEECCCCCCCCHHHCCCCCEEEECCCCCCCEECCCCCEEEEEEECCCCCCEEEEE
LNGENKQGIIKEVGRDAVTSSIIHIDIQEVSALEKVRWTIPIFFEGREQLKKKELYIQVY
ECCCCCCCHHHHHCCHHHHHEEEEEEHHHHHHHHHEEEEEEEEECCHHHHCCEEEEEEEE
LTEVEVEGKASDIPNNITLNVGNLELGEEVKVKDLNIGSNIRIFNELENTIAIISSSQNT
EEEEEECCCCCCCCCEEEEEECCEECCCEEEEEEECCCCCEEEEECCCCEEEEEECCCCC
NKNIEEEDPSEVE
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12552129