| Definition | Clostridium tetani E88 chromosome, complete genome. |
|---|---|
| Accession | NC_004557 |
| Length | 2,799,251 |
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The map label for this gene is 28210487
Identifier: 28210487
GI number: 28210487
Start: 806878
End: 808584
Strand: Direct
Name: 28210487
Synonym: CTC00769
Alternate gene names: NA
Gene position: 806878-808584 (Clockwise)
Preceding gene: 28210486
Following gene: 28210488
Centisome position: 28.82
GC content: 30.52
Gene sequence:
>1707_bases ATGTTTAAAAAGAAGCAGGTTAAGGGTTTACTCTGCATGCTTATGACTTTTTTAATGGTTTTTACTACTGTAGATACTGG AATATTAGGTATGAAACAAGTATTCGCAGAAACTATTAAAAAAGAAAGTATACCTACAGAAGTGAAAGAGGATTCAGAAG AGAAAAAAGATGTAGAAAAAAATAAATCTGTAGATACTGATAAAAAGCAGGAATTAACTGATGATAAATCAAGAAATGAA AAAATTTACAATGATAAAATAGTACATAAAGCACAAAGTGAGAGTATTGGAACAACCTCTATAAAAATAGTCAATGATCT TAGTAAAGTTAAAGTTGGAAATAAAGTAGAACTGGAGGTAAAGAACGACAGTAATGTAGTAATTCCTACGGAAAGTTTGT TATTTACAGTAAGTAATGAGAAATTAGTAAAAGAACAGATAGATAAAAATCTCGCATATATTCTTAAAAATGTAGAGAAT CCTTCACTTGGAACAGGTAAAGGGGAATGGTCTATTCTTTGTTTAGCAAGAGGGAACTATCCTGTACCTAAAGGTTACTA TGATAAATATTACAAAAATGTAGTAAAAGAAGTACAAAATGCAAAAGGAAATTTGCATAAAGTAAAGTATACAGAGCATT CAAGGTTAATTTTAGGACTAGCTTCTATAGGAAGAGATATTAAAAATGTAGGTGGATATAATCAATTAGAAAAACTTGCA GATTTTAAGACAGTTATTAGGCAAGGTATTAATGGTCCAATATTTGCACTTATAGCTCTTGATACACACAATTATGAAAT ACCTATAGTAAATAATGTAAAAGTACAAACTACAAGGGATATGCTTGTTCAGTATATTCTAGATAAAGAAATTAAAAAAG GAAAAGAAAATGCTGGTGGATGGGCATTATATGGTGAAACTCCAGATCCTGATATTACTGCAATGGCTATACAAGGACTT ACTCCATATTATAAAGGAAATCCTGAAGTGAAAGCAGCTGTAGATAGAGCTATTTCTTGGTTATCAAGTGCACAAAAAGA TGATGGCGGATATTCAAGCTGGGGATCAATAAATAGTGAAAGTATTGCACAGGTTGTAGTAGCTTTAACAGGACTAGGAA TAAATCCTCATAAAGATTCAAGATTTATAAAAAAAGGAAATTCAGCTATAGATGCGCTATTAACTTTCGCAGATCCAAAA GGTGGATTTATGCATGTTAAACCGGGAGGTAATACTAACGGTGGTGCAGCAGCAGGAGTAATAGACGGAATGGCAACTGA TCAAGGTACATATGCTTTAATTGCATATGATAGATTTGTAAACAGTAAAAATAGACTTTATGATATGACCGATGTAATTG TTAAAGCAGAAGAATCACATAAACCAGAGAATTTTAAAGCTGAAAGAATAGGAGAAGAAAATTTAAAGAAAAATTCAAGT GCTCAAGTTAAATTTGACGTAGAAAATATATCAAAAGAAGACGAAGAGGTTGCATTAGCAATAGTTTTATATGATAAAAA TACTAATGAAATGATAAATTACAGTTATGTTAAAAAGATATTAAAATCAGGAAAAAAGGAAGTATTTGCAGCTGGTTTTA TAATACCAGAAAAAGGAGACTATTTAGTTAAGGCTATAATTTGCGATGATTTAAATCCAAAAAAGATGAATGTGTTAGCA GATCCAATTAAAATAGAAGTAGAGTAG
Upstream 100 bases:
>100_bases TATCAAATTTATAAGTTTTGAAAAAGAGGAGGTAGGTATATTTAGAGATACATAAAAACAATTTATATAATTATATAAAA TTTAAATAGGAGGTTAGAAA
Downstream 100 bases:
>100_bases TTAAAACTCAATAAAAAATATTGTAGTATTAAGGGGATTTAATACTACAATATATCTTAAAATAAGGAGAGAAAGATATG AAAAAGTTTTGGAAAAGTTT
Product: putative surface/cell-adhesion protein
Products: NA
Alternate protein names: Cell Wall Anchor Domain-Containing Protein; S-Layer Domain Protein; N-Acetylmuramoyl-L-Alanine Amidase; LPXTG-Motif Cell Wall Anchor Domain Protein; Copper Amine Oxidase Domain Protein
Number of amino acids: Translated: 568; Mature: 568
Protein sequence:
>568_residues MFKKKQVKGLLCMLMTFLMVFTTVDTGILGMKQVFAETIKKESIPTEVKEDSEEKKDVEKNKSVDTDKKQELTDDKSRNE KIYNDKIVHKAQSESIGTTSIKIVNDLSKVKVGNKVELEVKNDSNVVIPTESLLFTVSNEKLVKEQIDKNLAYILKNVEN PSLGTGKGEWSILCLARGNYPVPKGYYDKYYKNVVKEVQNAKGNLHKVKYTEHSRLILGLASIGRDIKNVGGYNQLEKLA DFKTVIRQGINGPIFALIALDTHNYEIPIVNNVKVQTTRDMLVQYILDKEIKKGKENAGGWALYGETPDPDITAMAIQGL TPYYKGNPEVKAAVDRAISWLSSAQKDDGGYSSWGSINSESIAQVVVALTGLGINPHKDSRFIKKGNSAIDALLTFADPK GGFMHVKPGGNTNGGAAAGVIDGMATDQGTYALIAYDRFVNSKNRLYDMTDVIVKAEESHKPENFKAERIGEENLKKNSS AQVKFDVENISKEDEEVALAIVLYDKNTNEMINYSYVKKILKSGKKEVFAAGFIIPEKGDYLVKAIICDDLNPKKMNVLA DPIKIEVE
Sequences:
>Translated_568_residues MFKKKQVKGLLCMLMTFLMVFTTVDTGILGMKQVFAETIKKESIPTEVKEDSEEKKDVEKNKSVDTDKKQELTDDKSRNE KIYNDKIVHKAQSESIGTTSIKIVNDLSKVKVGNKVELEVKNDSNVVIPTESLLFTVSNEKLVKEQIDKNLAYILKNVEN PSLGTGKGEWSILCLARGNYPVPKGYYDKYYKNVVKEVQNAKGNLHKVKYTEHSRLILGLASIGRDIKNVGGYNQLEKLA DFKTVIRQGINGPIFALIALDTHNYEIPIVNNVKVQTTRDMLVQYILDKEIKKGKENAGGWALYGETPDPDITAMAIQGL TPYYKGNPEVKAAVDRAISWLSSAQKDDGGYSSWGSINSESIAQVVVALTGLGINPHKDSRFIKKGNSAIDALLTFADPK GGFMHVKPGGNTNGGAAAGVIDGMATDQGTYALIAYDRFVNSKNRLYDMTDVIVKAEESHKPENFKAERIGEENLKKNSS AQVKFDVENISKEDEEVALAIVLYDKNTNEMINYSYVKKILKSGKKEVFAAGFIIPEKGDYLVKAIICDDLNPKKMNVLA DPIKIEVE >Mature_568_residues MFKKKQVKGLLCMLMTFLMVFTTVDTGILGMKQVFAETIKKESIPTEVKEDSEEKKDVEKNKSVDTDKKQELTDDKSRNE KIYNDKIVHKAQSESIGTTSIKIVNDLSKVKVGNKVELEVKNDSNVVIPTESLLFTVSNEKLVKEQIDKNLAYILKNVEN PSLGTGKGEWSILCLARGNYPVPKGYYDKYYKNVVKEVQNAKGNLHKVKYTEHSRLILGLASIGRDIKNVGGYNQLEKLA DFKTVIRQGINGPIFALIALDTHNYEIPIVNNVKVQTTRDMLVQYILDKEIKKGKENAGGWALYGETPDPDITAMAIQGL TPYYKGNPEVKAAVDRAISWLSSAQKDDGGYSSWGSINSESIAQVVVALTGLGINPHKDSRFIKKGNSAIDALLTFADPK GGFMHVKPGGNTNGGAAAGVIDGMATDQGTYALIAYDRFVNSKNRLYDMTDVIVKAEESHKPENFKAERIGEENLKKNSS AQVKFDVENISKEDEEVALAIVLYDKNTNEMINYSYVKKILKSGKKEVFAAGFIIPEKGDYLVKAIICDDLNPKKMNVLA DPIKIEVE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63014; Mature: 63014
Theoretical pI: Translated: 8.55; Mature: 8.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKKKQVKGLLCMLMTFLMVFTTVDTGILGMKQVFAETIKKESIPTEVKEDSEEKKDVEK CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHH NKSVDTDKKQELTDDKSRNEKIYNDKIVHKAQSESIGTTSIKIVNDLSKVKVGNKVELEV CCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEHHHHHHCCCCEEEEEE KNDSNVVIPTESLLFTVSNEKLVKEQIDKNLAYILKNVENPSLGTGKGEWSILCLARGNY CCCCCEEEECHHEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCC PVPKGYYDKYYKNVVKEVQNAKGNLHKVKYTEHSRLILGLASIGRDIKNVGGYNQLEKLA CCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHEEEHHHHHHHHHHCCCHHHHHHHH DFKTVIRQGINGPIFALIALDTHNYEIPIVNNVKVQTTRDMLVQYILDKEIKKGKENAGG HHHHHHHHCCCCCEEEEEEEECCCEEEEEECCEEEEHHHHHHHHHHHHHHHHCCCCCCCC WALYGETPDPDITAMAIQGLTPYYKGNPEVKAAVDRAISWLSSAQKDDGGYSSWGSINSE EEEECCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH SIAQVVVALTGLGINPHKDSRFIKKGNSAIDALLTFADPKGGFMHVKPGGNTNGGAAAGV HHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHEEEECCCCCEEEECCCCCCCCCCHHHH IDGMATDQGTYALIAYDRFVNSKNRLYDMTDVIVKAEESHKPENFKAERIGEENLKKNSS HCCCCCCCCCEEEEEEEHHHCCCCCEEEHHHHHEECCCCCCCCCCCHHHCCHHHHCCCCC AQVKFDVENISKEDEEVALAIVLYDKNTNEMINYSYVKKILKSGKKEVFAAGFIIPEKGD CEEEEEHHHCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCCC YLVKAIICDDLNPKKMNVLADPIKIEVE EEEEEEEECCCCCCCEEEEECCEEEEEC >Mature Secondary Structure MFKKKQVKGLLCMLMTFLMVFTTVDTGILGMKQVFAETIKKESIPTEVKEDSEEKKDVEK CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHH NKSVDTDKKQELTDDKSRNEKIYNDKIVHKAQSESIGTTSIKIVNDLSKVKVGNKVELEV CCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEEHHHHHHCCCCEEEEEE KNDSNVVIPTESLLFTVSNEKLVKEQIDKNLAYILKNVENPSLGTGKGEWSILCLARGNY CCCCCEEEECHHEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCC PVPKGYYDKYYKNVVKEVQNAKGNLHKVKYTEHSRLILGLASIGRDIKNVGGYNQLEKLA CCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHEEEHHHHHHHHHHCCCHHHHHHHH DFKTVIRQGINGPIFALIALDTHNYEIPIVNNVKVQTTRDMLVQYILDKEIKKGKENAGG HHHHHHHHCCCCCEEEEEEEECCCEEEEEECCEEEEHHHHHHHHHHHHHHHHCCCCCCCC WALYGETPDPDITAMAIQGLTPYYKGNPEVKAAVDRAISWLSSAQKDDGGYSSWGSINSE EEEECCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH SIAQVVVALTGLGINPHKDSRFIKKGNSAIDALLTFADPKGGFMHVKPGGNTNGGAAAGV HHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHEEEECCCCCEEEECCCCCCCCCCHHHH IDGMATDQGTYALIAYDRFVNSKNRLYDMTDVIVKAEESHKPENFKAERIGEENLKKNSS HCCCCCCCCCEEEEEEEHHHCCCCCEEEHHHHHEECCCCCCCCCCCHHHCCHHHHCCCCC AQVKFDVENISKEDEEVALAIVLYDKNTNEMINYSYVKKILKSGKKEVFAAGFIIPEKGD CEEEEEHHHCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEEEEECCCC YLVKAIICDDLNPKKMNVLADPIKIEVE EEEEEEEECCCCCCCEEEEECCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA