| Definition | Clostridium tetani E88 chromosome, complete genome. |
|---|---|
| Accession | NC_004557 |
| Length | 2,799,251 |
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The map label for this gene is 28210488
Identifier: 28210488
GI number: 28210488
Start: 808662
End: 810473
Strand: Direct
Name: 28210488
Synonym: CTC00770
Alternate gene names: NA
Gene position: 808662-810473 (Clockwise)
Preceding gene: 28210487
Following gene: 28210489
Centisome position: 28.89
GC content: 30.24
Gene sequence:
>1812_bases ATGAAAAAGTTTTGGAAAAGTTTTATGGCTACATTACTTATAGTGATAAGCATGACTTGTACAGTTTTTGCAAAAGTGGA TGTAAAAGTTAATGTAAGTGGAAATGATGTAATAATAAATGGTAGATCTAATCATACAGGTCAAAATGTTATGATACAAA CATGGAGTGGAGATAAAAAATATTATATAGATGCAGATAAAACAGATAAAGAAGGTAGTTTCCAATTTAAGTTTAAAACA GCTGATAATATGGACTATGATGGCAAGATAAATGTAGGAGGAGAATTACAAGATATTAAATTTTCTACCAAACATATAAA ATTAAACAAAAATAATATAGAGTTAAAAGTAGGAGAAAGTGAAAAATTAATAGCTACTATAACGTCAGAAAGTAATACAA ATAAAAAATTAATATGGAAGTCCTCTGATAAAAATATTGCTACAGTAGATACAGAAGGTGAAGTTAAAGCCATAAAAGAA GGAAAAACTACAATAGAAGTAACAACAGAGGATGGTGCTAAAAAAGATACATGTATTGTAAATGTAGTAAAGAGTTCTGG TGGTAGTAGCGGTGGCGGTGGTGGTACACCGTCAAAACCAGATGGTAATGAAGTTAAAGTATTTATTAGAGTAGAAGGAT ATGACAGAACTGTAGTTCCTAGAACAGAAGTAAAAGTAAAATTATTTAATTTAAATTCCTATTTAGGTAAAGCTACAGGT TCTTCAGCTGAACCTTCAAAAGGATGGAATGTAGATAAATTTGATAGACCAACTCATGCTCATGCCATAGTAAAACTATT AAATGATAAACACATAAAATATGATTTTCAAGATTATGGATGGAGCATATATATGGCAGAAATAGCCGGGGACAGGGAAT TTGATCATAGACCTACCTCAGGTTGGATGTACAGTGTAAATGGTAAACTTCCTGCTGTTGGAAGTAATGGACTACCAGTA AGAGATGGAGACGAAGTAGTATGGTTCTTTGGAGCATATGGATTTGACACTATAGTTACTACTTTAGAATCAAATAAAAC TAAAGTAAAAGCGGGAGAAGAAATAGAAGTACAGTTAGATGGTTTCAGCACAGTAGGTGCTAATGGAGAAGGTCAAGTTG ATGATTATGGACAGATAAAAGAACCAGTAAATGAAGCTACTATATTGGTAAATGGACAAGAATATAAATTAGATGGAAAA GTTGTAAAAACGGATAGTAATGGTAAAGCTAAATTAAAATTTGATAAGGATGGAATTTATAAAATTTCAGCAATTAGATA TAAAAAAGATCAAGGTAAGAAAATAGATATAGTAAGACCTCAACCATTAGAAATAAAGGTAGGAGAAGGAAAATCTTCAG GCGGTGGCGGTAGTAGTGCTGCTGTAAAGGAAGAACAAAAACAAGAAGCTTTAAAGGAATTAGAGGAAAGACTTAAAAAA GTTTCAATAAAAGATAATGAGCTTAATGTAAAAAAAGAAGAAGAAAAAACTATAGTATCTGCGGGAGAATATGTACTTTA TTCAGCTATAAAAGAAGCAGAAGGAATAATTAGAGAAATAAATGAAAGATATAAAGATATAGAGTTAGGAGAAGATGTAA ATATAATTCCTATAGATACAAGCAAAATAACAGGTGAAAATATTGCATTTAGATTAGAAGATAATTCAATTAAAGCTTTA AATGATAAAGGATTTGGAGTGAAAATTGTATTTGATAATATAGAAGTTAAAGTTCCAAACAAGATAATATCTCAAGAAAG AAGTGGAAAAGAGCTAGAAATAAGAAAAAGCAATGTATCTAAAGATGTATAG
Upstream 100 bases:
>100_bases CAATTAAAATAGAAGTAGAGTAGTTAAAACTCAATAAAAAATATTGTAGTATTAAGGGGATTTAATACTACAATATATCT TAAAATAAGGAGAGAAAGAT
Downstream 100 bases:
>100_bases AATAAAATAGTAAATAGTTTAAATGATAAAGTACTATTACCTTCATATAGTGTGTCTTTATATGAAGTAGGAAGTAGTGA AAAGAAAATTAGTATGAAGG
Product: surface/cell-adhesion protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 603; Mature: 603
Protein sequence:
>603_residues MKKFWKSFMATLLIVISMTCTVFAKVDVKVNVSGNDVIINGRSNHTGQNVMIQTWSGDKKYYIDADKTDKEGSFQFKFKT ADNMDYDGKINVGGELQDIKFSTKHIKLNKNNIELKVGESEKLIATITSESNTNKKLIWKSSDKNIATVDTEGEVKAIKE GKTTIEVTTEDGAKKDTCIVNVVKSSGGSSGGGGGTPSKPDGNEVKVFIRVEGYDRTVVPRTEVKVKLFNLNSYLGKATG SSAEPSKGWNVDKFDRPTHAHAIVKLLNDKHIKYDFQDYGWSIYMAEIAGDREFDHRPTSGWMYSVNGKLPAVGSNGLPV RDGDEVVWFFGAYGFDTIVTTLESNKTKVKAGEEIEVQLDGFSTVGANGEGQVDDYGQIKEPVNEATILVNGQEYKLDGK VVKTDSNGKAKLKFDKDGIYKISAIRYKKDQGKKIDIVRPQPLEIKVGEGKSSGGGGSSAAVKEEQKQEALKELEERLKK VSIKDNELNVKKEEEKTIVSAGEYVLYSAIKEAEGIIREINERYKDIELGEDVNIIPIDTSKITGENIAFRLEDNSIKAL NDKGFGVKIVFDNIEVKVPNKIISQERSGKELEIRKSNVSKDV
Sequences:
>Translated_603_residues MKKFWKSFMATLLIVISMTCTVFAKVDVKVNVSGNDVIINGRSNHTGQNVMIQTWSGDKKYYIDADKTDKEGSFQFKFKT ADNMDYDGKINVGGELQDIKFSTKHIKLNKNNIELKVGESEKLIATITSESNTNKKLIWKSSDKNIATVDTEGEVKAIKE GKTTIEVTTEDGAKKDTCIVNVVKSSGGSSGGGGGTPSKPDGNEVKVFIRVEGYDRTVVPRTEVKVKLFNLNSYLGKATG SSAEPSKGWNVDKFDRPTHAHAIVKLLNDKHIKYDFQDYGWSIYMAEIAGDREFDHRPTSGWMYSVNGKLPAVGSNGLPV RDGDEVVWFFGAYGFDTIVTTLESNKTKVKAGEEIEVQLDGFSTVGANGEGQVDDYGQIKEPVNEATILVNGQEYKLDGK VVKTDSNGKAKLKFDKDGIYKISAIRYKKDQGKKIDIVRPQPLEIKVGEGKSSGGGGSSAAVKEEQKQEALKELEERLKK VSIKDNELNVKKEEEKTIVSAGEYVLYSAIKEAEGIIREINERYKDIELGEDVNIIPIDTSKITGENIAFRLEDNSIKAL NDKGFGVKIVFDNIEVKVPNKIISQERSGKELEIRKSNVSKDV >Mature_603_residues MKKFWKSFMATLLIVISMTCTVFAKVDVKVNVSGNDVIINGRSNHTGQNVMIQTWSGDKKYYIDADKTDKEGSFQFKFKT ADNMDYDGKINVGGELQDIKFSTKHIKLNKNNIELKVGESEKLIATITSESNTNKKLIWKSSDKNIATVDTEGEVKAIKE GKTTIEVTTEDGAKKDTCIVNVVKSSGGSSGGGGGTPSKPDGNEVKVFIRVEGYDRTVVPRTEVKVKLFNLNSYLGKATG SSAEPSKGWNVDKFDRPTHAHAIVKLLNDKHIKYDFQDYGWSIYMAEIAGDREFDHRPTSGWMYSVNGKLPAVGSNGLPV RDGDEVVWFFGAYGFDTIVTTLESNKTKVKAGEEIEVQLDGFSTVGANGEGQVDDYGQIKEPVNEATILVNGQEYKLDGK VVKTDSNGKAKLKFDKDGIYKISAIRYKKDQGKKIDIVRPQPLEIKVGEGKSSGGGGSSAAVKEEQKQEALKELEERLKK VSIKDNELNVKKEEEKTIVSAGEYVLYSAIKEAEGIIREINERYKDIELGEDVNIIPIDTSKITGENIAFRLEDNSIKAL NDKGFGVKIVFDNIEVKVPNKIISQERSGKELEIRKSNVSKDV
Specific function: Unknown
COG id: COG5492
COG function: function code N; Bacterial surface proteins containing Ig-like domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003343 - InterPro: IPR008985 - InterPro: IPR008964 [H]
Pfam domain/function: PF02368 Big_2 [H]
EC number: NA
Molecular weight: Translated: 66655; Mature: 66655
Theoretical pI: Translated: 7.16; Mature: 7.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKFWKSFMATLLIVISMTCTVFAKVDVKVNVSGNDVIINGRSNHTGQNVMIQTWSGDKK CHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCEEEEECCCCCCCCEEEEEEECCCEE YYIDADKTDKEGSFQFKFKTADNMDYDGKINVGGELQDIKFSTKHIKLNKNNIELKVGES EEEECCCCCCCCCEEEEEEECCCCCCCCEEECCCCEEEEEEEEEEEEEECCEEEEEECCC EKLIATITSESNTNKKLIWKSSDKNIATVDTEGEVKAIKEGKTTIEVTTEDGAKKDTCIV CEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCEEEEEEECCCCCCCEEEE NVVKSSGGSSGGGGGTPSKPDGNEVKVFIRVEGYDRTVVPRTEVKVKLFNLNSYLGKATG EEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEEEECCHHHCCCCC SSAEPSKGWNVDKFDRPTHAHAIVKLLNDKHIKYDFQDYGWSIYMAEIAGDREFDHRPTS CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEHHHCCEEEEEEEECCCCCCCCCCCC GWMYSVNGKLPAVGSNGLPVRDGDEVVWFFGAYGFDTIVTTLESNKTKVKAGEEIEVQLD CEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCEEEECCCEEEEEEC GFSTVGANGEGQVDDYGQIKEPVNEATILVNGQEYKLDGKVVKTDSNGKAKLKFDKDGIY CEEEECCCCCCCCCCCHHHHCCCCCEEEEECCCEEEECCEEEEECCCCEEEEEECCCCCE KISAIRYKKDQGKKIDIVRPQPLEIKVGEGKSSGGGGSSAAVKEEQKQEALKELEERLKK EEEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH VSIKDNELNVKKEEEKTIVSAGEYVLYSAIKEAEGIIREINERYKDIELGEDVNIIPIDT CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECC SKITGENIAFRLEDNSIKALNDKGFGVKIVFDNIEVKVPNKIISQERSGKELEIRKSNVS CEECCCCEEEEEECCCEEEECCCCCEEEEEEECEEEECCHHHHCCCCCCCEEEEEECCCC KDV CCC >Mature Secondary Structure MKKFWKSFMATLLIVISMTCTVFAKVDVKVNVSGNDVIINGRSNHTGQNVMIQTWSGDKK CHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCEEEEECCCCCCCCEEEEEEECCCEE YYIDADKTDKEGSFQFKFKTADNMDYDGKINVGGELQDIKFSTKHIKLNKNNIELKVGES EEEECCCCCCCCCEEEEEEECCCCCCCCEEECCCCEEEEEEEEEEEEEECCEEEEEECCC EKLIATITSESNTNKKLIWKSSDKNIATVDTEGEVKAIKEGKTTIEVTTEDGAKKDTCIV CEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCEEEEEEECCCCCCCEEEE NVVKSSGGSSGGGGGTPSKPDGNEVKVFIRVEGYDRTVVPRTEVKVKLFNLNSYLGKATG EEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEECCCCEEEEEEEECCHHHCCCCC SSAEPSKGWNVDKFDRPTHAHAIVKLLNDKHIKYDFQDYGWSIYMAEIAGDREFDHRPTS CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEHHHCCEEEEEEEECCCCCCCCCCCC GWMYSVNGKLPAVGSNGLPVRDGDEVVWFFGAYGFDTIVTTLESNKTKVKAGEEIEVQLD CEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCEEEECCCEEEEEEC GFSTVGANGEGQVDDYGQIKEPVNEATILVNGQEYKLDGKVVKTDSNGKAKLKFDKDGIY CEEEECCCCCCCCCCCHHHHCCCCCEEEEECCCEEEECCEEEEECCCCEEEEEECCCCCE KISAIRYKKDQGKKIDIVRPQPLEIKVGEGKSSGGGGSSAAVKEEQKQEALKELEERLKK EEEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH VSIKDNELNVKKEEEKTIVSAGEYVLYSAIKEAEGIIREINERYKDIELGEDVNIIPIDT CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECC SKITGENIAFRLEDNSIKALNDKGFGVKIVFDNIEVKVPNKIISQERSGKELEIRKSNVS CEECCCCEEEEEECCCEEEECCCCCEEEEEEECEEEECCHHHHCCCCCCCEEEEEECCCC KDV CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11466286; 1916274 [H]