| Definition | Clostridium tetani E88 chromosome, complete genome. |
|---|---|
| Accession | NC_004557 |
| Length | 2,799,251 |
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The map label for this gene is 28210480
Identifier: 28210480
GI number: 28210480
Start: 797026
End: 797754
Strand: Direct
Name: 28210480
Synonym: CTC00760
Alternate gene names: NA
Gene position: 797026-797754 (Clockwise)
Preceding gene: 28210479
Following gene: 28210481
Centisome position: 28.47
GC content: 21.26
Gene sequence:
>729_bases ATGAAAAAAAATTTAAAAAATATATACATAGATGATGGATTTATAATGTTAACTTATATTTTTATGAATATATTAGCTTT ATTAGCTTATTTGTTTATGGTGCCTTTTAGAGTAGAGGGAATTAATTTTGAAATATATAAAAATACGTATATGTATTTTT ATATATTTCAGTTAATTGTATTTTCTTTTTCTATAGTCCATTTTAAAGTAGAAAAAAATATAAGTTTCGAAAATTTATTG GGAAATATTATTAAAACAATAATACTTGTTATTTCTAACATACCCTTAATATTAATTATATTTATATCTGGTAATGTAGA AAGTTTAAATTTTACTTATCCTTTAATTTTACAAACTATTTATGGACTTGCCATAATTAGTTTTAAACATTTATTAAATA TTATTGATATAACAGAAAAGTATTCAAGCTTTATAGTTAACTTTAGCGTAACTTTTATAAATATATTCAGCTTTGCTTTT TTATATATTTACTATAAGTATGCTCAAATAGTTATAACTACCATATATGATAAAGATATACCTAAGATATTTTTTATAAA CCCTTTAATGAGTATATCAGGGTTTATAAATATGGAGATAACAGAGTATACTCAAATGGGTATAACCCCTATAATATGGG GAATTTGTTTTTGGACAATATGTGCACTTATAAATTTAGTAGTTATAAAAAAAATAGGAGGCCATAGTATTGGAATGGAA AACAATTGA
Upstream 100 bases:
>100_bases CTTACATGGAAAGGTTTTAAATTTAAGAGTAAAAGGAAAAGGAAGATTAATAATTCCTAGTATATATGTAAAAGGAGCTT TAAACTAAGGTGGGATATTT
Downstream 100 bases:
>100_bases ACAGATTTTAAAAAAAATATTAAGAAAGCTATGGCTTGAACGATTACTAAAAAATTTAATTAATGTATTATTAATGTCTT CTATAGGTATTTTTGTATTA
Product: membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 242; Mature: 242
Protein sequence:
>242_residues MKKNLKNIYIDDGFIMLTYIFMNILALLAYLFMVPFRVEGINFEIYKNTYMYFYIFQLIVFSFSIVHFKVEKNISFENLL GNIIKTIILVISNIPLILIIFISGNVESLNFTYPLILQTIYGLAIISFKHLLNIIDITEKYSSFIVNFSVTFINIFSFAF LYIYYKYAQIVITTIYDKDIPKIFFINPLMSISGFINMEITEYTQMGITPIIWGICFWTICALINLVVIKKIGGHSIGME NN
Sequences:
>Translated_242_residues MKKNLKNIYIDDGFIMLTYIFMNILALLAYLFMVPFRVEGINFEIYKNTYMYFYIFQLIVFSFSIVHFKVEKNISFENLL GNIIKTIILVISNIPLILIIFISGNVESLNFTYPLILQTIYGLAIISFKHLLNIIDITEKYSSFIVNFSVTFINIFSFAF LYIYYKYAQIVITTIYDKDIPKIFFINPLMSISGFINMEITEYTQMGITPIIWGICFWTICALINLVVIKKIGGHSIGME NN >Mature_242_residues MKKNLKNIYIDDGFIMLTYIFMNILALLAYLFMVPFRVEGINFEIYKNTYMYFYIFQLIVFSFSIVHFKVEKNISFENLL GNIIKTIILVISNIPLILIIFISGNVESLNFTYPLILQTIYGLAIISFKHLLNIIDITEKYSSFIVNFSVTFINIFSFAF LYIYYKYAQIVITTIYDKDIPKIFFINPLMSISGFINMEITEYTQMGITPIIWGICFWTICALINLVVIKKIGGHSIGME NN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28208; Mature: 28208
Theoretical pI: Translated: 8.14; Mature: 8.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKNLKNIYIDDGFIMLTYIFMNILALLAYLFMVPFRVEGINFEIYKNTYMYFYIFQLIV CCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCEEECCEEEEEECHHHHHHHHHHHH FSFSIVHFKVEKNISFENLLGNIIKTIILVISNIPLILIIFISGNVESLNFTYPLILQTI HHHHHHEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEECCHHHHHHHHH YGLAIISFKHLLNIIDITEKYSSFIVNFSVTFINIFSFAFLYIYYKYAQIVITTIYDKDI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCC PKIFFINPLMSISGFINMEITEYTQMGITPIIWGICFWTICALINLVVIKKIGGHSIGME CEEEEECHHHHHCCEEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC NN CC >Mature Secondary Structure MKKNLKNIYIDDGFIMLTYIFMNILALLAYLFMVPFRVEGINFEIYKNTYMYFYIFQLIV CCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCEEECCEEEEEECHHHHHHHHHHHH FSFSIVHFKVEKNISFENLLGNIIKTIILVISNIPLILIIFISGNVESLNFTYPLILQTI HHHHHHEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEECCHHHHHHHHH YGLAIISFKHLLNIIDITEKYSSFIVNFSVTFINIFSFAFLYIYYKYAQIVITTIYDKDI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCC PKIFFINPLMSISGFINMEITEYTQMGITPIIWGICFWTICALINLVVIKKIGGHSIGME CEEEEECHHHHHCCEEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC NN CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA