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The map label for this gene is sigW [H]

Identifier: 28210292

GI number: 28210292

Start: 573257

End: 573847

Strand: Direct

Name: sigW [H]

Synonym: CTC00553

Alternate gene names: 28210292

Gene position: 573257-573847 (Clockwise)

Preceding gene: 28210291

Following gene: 28210293

Centisome position: 20.48

GC content: 29.61

Gene sequence:

>591_bases
ATGAAGCGAAATTGCAATGTATTTCGTTTTATTTATAGGGGAGGAGGAAAATATCCCTTCGGATATTTATGCAATATGCA
CGATAAGGTAGAACAATTAATTGATGACTATGGTAACGATGTATTAAGGGTTGCATATATGTACCTTAAAGATAAAAGCA
TGGCAGAAGACGCTTTCCAAGAGGTTTTTATAAAAGTATATAAAAATATAGATAAATTAGAATATATAGAAAAAGAAAAA
AGCTGGCTTATGACCATTACAGTAAATACTTGCAAGGATATACTTAAGAGTGCTTGGATGAGAAAAATGTCCTTTATTGG
AGAAAGAGAAGAGGAAATATCTGCTACTGAAGAAAACATGGAAATGAAGATAATAAATAAAATAGAAGGAGAAAATATAT
TGGAAAAAGTAATGTCATTACCAGAACAATATAAAGATGTAATTTTACTTTATTATTATGAAGAGTTTTCAACGGTAGAA
ATAGGAGATATACTAAAAATAGCAGAAGGTACTGTAAGAAGTAGACTTTATAGAGGTAGACAAATCTTAAAAAATATTTT
GGAAGATGGGAAGAGTGGATATGGTGGATAA

Upstream 100 bases:

>100_bases
GATAAAAAATCTAGTATTGTAATAACCAGGGTAACAACTAATCTTATAAAAGCTCAACTACAAATAAGATAAGTTTTAAA
ATAAGAAAATTTTAATAAAA

Downstream 100 bases:

>100_bases
AAATAGTTTTATTAAAAATTCACTAGAAAATGAATTAAAAGATATTTATGTAACTGAAGACTTAAAATTAAAAACTTTAA
GCAGGATTAAAAAAGAAGAT

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-W factor [H]

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MKRNCNVFRFIYRGGGKYPFGYLCNMHDKVEQLIDDYGNDVLRVAYMYLKDKSMAEDAFQEVFIKVYKNIDKLEYIEKEK
SWLMTITVNTCKDILKSAWMRKMSFIGEREEEISATEENMEMKIINKIEGENILEKVMSLPEQYKDVILLYYYEEFSTVE
IGDILKIAEGTVRSRLYRGRQILKNILEDGKSGYGG

Sequences:

>Translated_196_residues
MKRNCNVFRFIYRGGGKYPFGYLCNMHDKVEQLIDDYGNDVLRVAYMYLKDKSMAEDAFQEVFIKVYKNIDKLEYIEKEK
SWLMTITVNTCKDILKSAWMRKMSFIGEREEEISATEENMEMKIINKIEGENILEKVMSLPEQYKDVILLYYYEEFSTVE
IGDILKIAEGTVRSRLYRGRQILKNILEDGKSGYGG
>Mature_196_residues
MKRNCNVFRFIYRGGGKYPFGYLCNMHDKVEQLIDDYGNDVLRVAYMYLKDKSMAEDAFQEVFIKVYKNIDKLEYIEKEK
SWLMTITVNTCKDILKSAWMRKMSFIGEREEEISATEENMEMKIINKIEGENILEKVMSLPEQYKDVILLYYYEEFSTVE
IGDILKIAEGTVRSRLYRGRQILKNILEDGKSGYGG

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma-W controls genes involved in transport processes and detoxification [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014294
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23097; Mature: 23097

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRNCNVFRFIYRGGGKYPFGYLCNMHDKVEQLIDDYGNDVLRVAYMYLKDKSMAEDAFQ
CCCCCHHHHHEECCCCCCCHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHH
EVFIKVYKNIDKLEYIEKEKSWLMTITVNTCKDILKSAWMRKMSFIGEREEEISATEENM
HHHHHHHHCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
EMKIINKIEGENILEKVMSLPEQYKDVILLYYYEEFSTVEIGDILKIAEGTVRSRLYRGR
HHHHHHHHCCHHHHHHHHHCHHHHHHEEEEEEECCCCEECHHHHHHHHHHHHHHHHHHHH
QILKNILEDGKSGYGG
HHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKRNCNVFRFIYRGGGKYPFGYLCNMHDKVEQLIDDYGNDVLRVAYMYLKDKSMAEDAFQ
CCCCCHHHHHEECCCCCCCHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHH
EVFIKVYKNIDKLEYIEKEKSWLMTITVNTCKDILKSAWMRKMSFIGEREEEISATEENM
HHHHHHHHCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
EMKIINKIEGENILEKVMSLPEQYKDVILLYYYEEFSTVEIGDILKIAEGTVRSRLYRGR
HHHHHHHHCCHHHHHHHHHCHHHHHHEEEEEEECCCCEECHHHHHHHHHHHHHHHHHHHH
QILKNILEDGKSGYGG
HHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377; 12207695 [H]