| Definition | Clostridium tetani E88 chromosome, complete genome. |
|---|---|
| Accession | NC_004557 |
| Length | 2,799,251 |
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The map label for this gene is 28210155
Identifier: 28210155
GI number: 28210155
Start: 394782
End: 396311
Strand: Direct
Name: 28210155
Synonym: CTC00401
Alternate gene names: NA
Gene position: 394782-396311 (Clockwise)
Preceding gene: 28210154
Following gene: 28210156
Centisome position: 14.1
GC content: 32.42
Gene sequence:
>1530_bases TTGTTTAGTGAGGTAGAGAAAATGAAAATAGGATTTGATCACGAAAAATATATTGAAGAGCAATCAAAGTATATTTTAGA AAGAGTTAATAACTATGACAAATTATACTTAGAATTTGGTGGTAAACTTCTATATGATCTTCATGCCAAGAGGGTTTTAC CAGGATTCGATGAAAATGCAAAAATTAAGCTTTTACACAAACTAAAAGAAAAAGTTGAGATAATTATTTGTGTATACGCA GGTGACATTGAAAGAAACAAAATAAGAGGAGACTTTGGAATAACCTATGATGTAGATGTTTTAAGACTAATTGACGACTT AAGAAGTTACGATCTTCAGGTAAACAGTGTTGTAATAACTAGATACAGTGGGCAACCATCTACTACCGTTTTTATAAATA AACTTGAGCGTAGAGGTATAAAGGTATATAAACATGAAGCCACTAAAGGATATCCAGCAGATGTGGATACTATTGTAAGT GATGAAGGATATGGGAAAAATCCTTATATTGAAACAACTAAACCTATTGTGGTTGTAACAGCACCAGGACCAGGTAGCGG TAAACTTGCTACATGTCTAAGCCAGCTTTATCATGAGTATAAACAAGGAAAAGTTGCGGGATATTCAAAATTTGAAACCT TTCCAGTTTGGAATGTACCCCTAAAGCATCCTCTAAATATAGCTTATGAAGCGGCAACAGTAGATCTTAAGGATGTAAAT ATGATTGATTCATTCCATTTTGATGCTTATAATGAAGTTGCTGTAAACTACAATCGTGATATCGAAAGTTTTCCTCTACT TAAAAGAATTATAGAGAAAATAACAGGAGAAGAATCTGGTTACAAATCACCAACAGATATGGGAGTAAACAGAGTAGGGT ACGGAATAATTGATGATGAAGTAGTTAAAAAGGCATCGGAGCAGGAAATAATAAGAAGGTATTTTAAAACAGGCTGTGAA TACAAAAAAGGATACTTAGATAAAGAAACTCTACATAGATCTAAGATTATCATGCATGAACTTAATTTAAAAGAAGACGA TAGGAAAGTTGTTATGCCTGCAAGAGAATACTCAGCAAAATTAAAGAAAAGATATAATAAAAATGAAGTATACCCAGTAG TGGCATTAGAACTTGAAGATGGAAAAGTATTAACAGGTAGAAATTCAGATGTAATGGATGGAACTGCTGCTGTAATTTTA AATGCAGTTAAATACTTAGCTAATATATCTGATGAAATTCATCTTATTTCTCCAGTTATACTTGAGCCAATTATAAATCT GAAATTAAAAACCTTAGGCAGTAAAAGTACTGCATTAACTTGTGAAGAAATATTAATTGCTCTTAGCATATGTGCAGTTA CAAATCCAACAGCGCAAGTAGCCATGGAAAAGTTATCAATGTTAAGGGGATGTCAGGCACATTCCACAACGATTTTAAGT GGAAATGAGGAGCAAACCTTTAGAAAACTTGGTATAGATATAACTTGTGATCCAGAGTACCCATCAGAAAGTCTTTATTA TAATAATTAA
Upstream 100 bases:
>100_bases GCTATAATTAAAATTAATATTTCTATTATTCTTTAAAAAATAACTCAATAATATTTTACTAAAAGTTAAAAGTATGTAAT AATAATATAGGTATTTTATA
Downstream 100 bases:
>100_bases TATTATAAAGATAATGTGAACATTAAAGCCGATTGTTATTAAATAATAATAATCGGTATTTTTTCTATTAAGTCCAAATA AGTATTTTGAAAAGTGGAAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 509; Mature: 509
Protein sequence:
>509_residues MFSEVEKMKIGFDHEKYIEEQSKYILERVNNYDKLYLEFGGKLLYDLHAKRVLPGFDENAKIKLLHKLKEKVEIIICVYA GDIERNKIRGDFGITYDVDVLRLIDDLRSYDLQVNSVVITRYSGQPSTTVFINKLERRGIKVYKHEATKGYPADVDTIVS DEGYGKNPYIETTKPIVVVTAPGPGSGKLATCLSQLYHEYKQGKVAGYSKFETFPVWNVPLKHPLNIAYEAATVDLKDVN MIDSFHFDAYNEVAVNYNRDIESFPLLKRIIEKITGEESGYKSPTDMGVNRVGYGIIDDEVVKKASEQEIIRRYFKTGCE YKKGYLDKETLHRSKIIMHELNLKEDDRKVVMPAREYSAKLKKRYNKNEVYPVVALELEDGKVLTGRNSDVMDGTAAVIL NAVKYLANISDEIHLISPVILEPIINLKLKTLGSKSTALTCEEILIALSICAVTNPTAQVAMEKLSMLRGCQAHSTTILS GNEEQTFRKLGIDITCDPEYPSESLYYNN
Sequences:
>Translated_509_residues MFSEVEKMKIGFDHEKYIEEQSKYILERVNNYDKLYLEFGGKLLYDLHAKRVLPGFDENAKIKLLHKLKEKVEIIICVYA GDIERNKIRGDFGITYDVDVLRLIDDLRSYDLQVNSVVITRYSGQPSTTVFINKLERRGIKVYKHEATKGYPADVDTIVS DEGYGKNPYIETTKPIVVVTAPGPGSGKLATCLSQLYHEYKQGKVAGYSKFETFPVWNVPLKHPLNIAYEAATVDLKDVN MIDSFHFDAYNEVAVNYNRDIESFPLLKRIIEKITGEESGYKSPTDMGVNRVGYGIIDDEVVKKASEQEIIRRYFKTGCE YKKGYLDKETLHRSKIIMHELNLKEDDRKVVMPAREYSAKLKKRYNKNEVYPVVALELEDGKVLTGRNSDVMDGTAAVIL NAVKYLANISDEIHLISPVILEPIINLKLKTLGSKSTALTCEEILIALSICAVTNPTAQVAMEKLSMLRGCQAHSTTILS GNEEQTFRKLGIDITCDPEYPSESLYYNN >Mature_509_residues MFSEVEKMKIGFDHEKYIEEQSKYILERVNNYDKLYLEFGGKLLYDLHAKRVLPGFDENAKIKLLHKLKEKVEIIICVYA GDIERNKIRGDFGITYDVDVLRLIDDLRSYDLQVNSVVITRYSGQPSTTVFINKLERRGIKVYKHEATKGYPADVDTIVS DEGYGKNPYIETTKPIVVVTAPGPGSGKLATCLSQLYHEYKQGKVAGYSKFETFPVWNVPLKHPLNIAYEAATVDLKDVN MIDSFHFDAYNEVAVNYNRDIESFPLLKRIIEKITGEESGYKSPTDMGVNRVGYGIIDDEVVKKASEQEIIRRYFKTGCE YKKGYLDKETLHRSKIIMHELNLKEDDRKVVMPAREYSAKLKKRYNKNEVYPVVALELEDGKVLTGRNSDVMDGTAAVIL NAVKYLANISDEIHLISPVILEPIINLKLKTLGSKSTALTCEEILIALSICAVTNPTAQVAMEKLSMLRGCQAHSTTILS GNEEQTFRKLGIDITCDPEYPSESLYYNN
Specific function: Unknown
COG id: COG4868
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0371 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014999 [H]
Pfam domain/function: PF08903 DUF1846 [H]
EC number: NA
Molecular weight: Translated: 57770; Mature: 57770
Theoretical pI: Translated: 6.59; Mature: 6.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFSEVEKMKIGFDHEKYIEEQSKYILERVNNYDKLYLEFGGKLLYDLHAKRVLPGFDENA CCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEHHHHHCCCCCCCCC KIKLLHKLKEKVEIIICVYAGDIERNKIRGDFGITYDVDVLRLIDDLRSYDLQVNSVVIT HHHHHHHHHHCEEEEEEEEECCCCCCCCCCCCCCEECHHHHHHHHHHHHCCEEEEEEEEE RYSGQPSTTVFINKLERRGIKVYKHEATKGYPADVDTIVSDEGYGKNPYIETTKPIVVVT EECCCCCCEEEEEHHHHCCCEEEEECCCCCCCCCCHHEECCCCCCCCCCEECCCCEEEEE APGPGSGKLATCLSQLYHEYKQGKVAGYSKFETFPVWNVPLKHPLNIAYEAATVDLKDVN CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEEEEEHHCC MIDSFHFDAYNEVAVNYNRDIESFPLLKRIIEKITGEESGYKSPTDMGVNRVGYGIIDDE HHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHCCHHHCCCCCCCHH VVKKASEQEIIRRYFKTGCEYKKGYLDKETLHRSKIIMHELNLKEDDRKVVMPAREYSAK HHHHCHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHH LKKRYNKNEVYPVVALELEDGKVLTGRNSDVMDGTAAVILNAVKYLANISDEIHLISPVI HHHHCCCCCEEEEEEEEECCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHHH LEPIINLKLKTLGSKSTALTCEEILIALSICAVTNPTAQVAMEKLSMLRGCQAHSTTILS HHHHHCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEC GNEEQTFRKLGIDITCDPEYPSESLYYNN CCHHHHHHHHCCEEEECCCCCCCCCCCCC >Mature Secondary Structure MFSEVEKMKIGFDHEKYIEEQSKYILERVNNYDKLYLEFGGKLLYDLHAKRVLPGFDENA CCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEHHHHHCCCCCCCCC KIKLLHKLKEKVEIIICVYAGDIERNKIRGDFGITYDVDVLRLIDDLRSYDLQVNSVVIT HHHHHHHHHHCEEEEEEEEECCCCCCCCCCCCCCEECHHHHHHHHHHHHCCEEEEEEEEE RYSGQPSTTVFINKLERRGIKVYKHEATKGYPADVDTIVSDEGYGKNPYIETTKPIVVVT EECCCCCCEEEEEHHHHCCCEEEEECCCCCCCCCCHHEECCCCCCCCCCEECCCCEEEEE APGPGSGKLATCLSQLYHEYKQGKVAGYSKFETFPVWNVPLKHPLNIAYEAATVDLKDVN CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEEEEEHHCC MIDSFHFDAYNEVAVNYNRDIESFPLLKRIIEKITGEESGYKSPTDMGVNRVGYGIIDDE HHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHCCHHHCCCCCCCHH VVKKASEQEIIRRYFKTGCEYKKGYLDKETLHRSKIIMHELNLKEDDRKVVMPAREYSAK HHHHCHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHH LKKRYNKNEVYPVVALELEDGKVLTGRNSDVMDGTAAVILNAVKYLANISDEIHLISPVI HHHHCCCCCEEEEEEEEECCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHHH LEPIINLKLKTLGSKSTALTCEEILIALSICAVTNPTAQVAMEKLSMLRGCQAHSTTILS HHHHHCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEC GNEEQTFRKLGIDITCDPEYPSESLYYNN CCHHHHHHHHCCEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12552129 [H]