| Definition | Clostridium tetani E88 chromosome, complete genome. |
|---|---|
| Accession | NC_004557 |
| Length | 2,799,251 |
Click here to switch to the map view.
The map label for this gene is yqhQ [H]
Identifier: 28210061
GI number: 28210061
Start: 284504
End: 285253
Strand: Direct
Name: yqhQ [H]
Synonym: CTC00300
Alternate gene names: 28210061
Gene position: 284504-285253 (Clockwise)
Preceding gene: 28210060
Following gene: 28210062
Centisome position: 10.16
GC content: 27.87
Gene sequence:
>750_bases ATGCCTATTATTAGAGGATTTATTGCATTGGTAGAATCTCTAATAATAGGGATAAAAACTTTAAATTATTCAGCATCTTT TTTTGAAGAAGATGAAGAAAAATCAAAATTTGATATATGGATTGAAAAAAAGTTTAGAGGGAATGCAGATAATATAATTA TAGCTATTGTTATGGGAGTATCTTTTTTGCTTTCTATAAGTTTATTTGTGGCTTTGCCTACATTTATTGCAAACTTATTT AAAAAATTAGGTATTGAAAGTTCGGTAGTTTTAAATATTATAGAGGGTATAATAAGAGTAGGGATATTTCTTTCTTACAT ATATATAATAGGAAAGATGGATGATATTAATAGATTCTTTCAATATCATGGAGCGGAACATAAAACAATATTTTGTTATG AGAATTCAGAAGAATTAACTGTTGAAAATGTGGCTAAATATTCTAGATTTCACCCAAGATGTGGTACTAACTTTTTGTTT TTGGTTATGATTGTAAGTATAATTATCTTTTCTTTTACTGGATGGAACTCTTTATCAGAAAGAATGATGTATAGAATTAT ACTTATACCAGTGGTATCAGGTACAACTTATGAAATTATAAAATGGCTAGGAAAAAGTAAAAGTAGAATATCTAAAATAA TAGCAGCACCAGGATTGGCGTTACAAAAACTTACCACTAGAGAACCTGACACATTACAAATAGAAGTGGCTATAAAGGCT TTAAAAGGTGCAGAAGGTATAGAAGATTAA
Upstream 100 bases:
>100_bases AGTTAACGGAATTGCTACAGCAGTAAGAAAAAGTGACGGAGAAATTATTATAGATGTACAACAGTTCACCCCTTACAATA AAAGAAATAAATTTTTTTCA
Downstream 100 bases:
>100_bases AAAGGAGTAAGCTATAAAATGGTTATAAAAAATTGTGAAACCATACAAGACCTTTTATCAGAAGGCATTAAATCTTTAAA AGAGGTAGGTATAGAAAGTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 249; Mature: 248
Protein sequence:
>249_residues MPIIRGFIALVESLIIGIKTLNYSASFFEEDEEKSKFDIWIEKKFRGNADNIIIAIVMGVSFLLSISLFVALPTFIANLF KKLGIESSVVLNIIEGIIRVGIFLSYIYIIGKMDDINRFFQYHGAEHKTIFCYENSEELTVENVAKYSRFHPRCGTNFLF LVMIVSIIIFSFTGWNSLSERMMYRIILIPVVSGTTYEIIKWLGKSKSRISKIIAAPGLALQKLTTREPDTLQIEVAIKA LKGAEGIED
Sequences:
>Translated_249_residues MPIIRGFIALVESLIIGIKTLNYSASFFEEDEEKSKFDIWIEKKFRGNADNIIIAIVMGVSFLLSISLFVALPTFIANLF KKLGIESSVVLNIIEGIIRVGIFLSYIYIIGKMDDINRFFQYHGAEHKTIFCYENSEELTVENVAKYSRFHPRCGTNFLF LVMIVSIIIFSFTGWNSLSERMMYRIILIPVVSGTTYEIIKWLGKSKSRISKIIAAPGLALQKLTTREPDTLQIEVAIKA LKGAEGIED >Mature_248_residues PIIRGFIALVESLIIGIKTLNYSASFFEEDEEKSKFDIWIEKKFRGNADNIIIAIVMGVSFLLSISLFVALPTFIANLFK KLGIESSVVLNIIEGIIRVGIFLSYIYIIGKMDDINRFFQYHGAEHKTIFCYENSEELTVENVAKYSRFHPRCGTNFLFL VMIVSIIIFSFTGWNSLSERMMYRIILIPVVSGTTYEIIKWLGKSKSRISKIIAAPGLALQKLTTREPDTLQIEVAIKAL KGAEGIED
Specific function: Unknown
COG id: COG3872
COG function: function code R; Predicted metal-dependent enzyme
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010787 - ProDom: PD131510 [H]
Pfam domain/function: PF07136 DUF1385 [H]
EC number: NA
Molecular weight: Translated: 28210; Mature: 28078
Theoretical pI: Translated: 8.18; Mature: 8.18
Prosite motif: PS00012 PHOSPHOPANTETHEINE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIIRGFIALVESLIIGIKTLNYSASFFEEDEEKSKFDIWIEKKFRGNADNIIIAIVMGV CCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHH SFLLSISLFVALPTFIANLFKKLGIESSVVLNIIEGIIRVGIFLSYIYIIGKMDDINRFF HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH QYHGAEHKTIFCYENSEELTVENVAKYSRFHPRCGTNFLFLVMIVSIIIFSFTGWNSLSE HHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHH RMMYRIILIPVVSGTTYEIIKWLGKSKSRISKIIAAPGLALQKLTTREPDTLQIEVAIKA HHHHHHHEEEECCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEHHHH LKGAEGIED HHCCCCCCC >Mature Secondary Structure PIIRGFIALVESLIIGIKTLNYSASFFEEDEEKSKFDIWIEKKFRGNADNIIIAIVMGV CHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHH SFLLSISLFVALPTFIANLFKKLGIESSVVLNIIEGIIRVGIFLSYIYIIGKMDDINRFF HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH QYHGAEHKTIFCYENSEELTVENVAKYSRFHPRCGTNFLFLVMIVSIIIFSFTGWNSLSE HHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHH RMMYRIILIPVVSGTTYEIIKWLGKSKSRISKIIAAPGLALQKLTTREPDTLQIEVAIKA HHHHHHHEEEECCCCHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEHHHH LKGAEGIED HHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]