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The map label for this gene is araN [H]

Identifier: 28210030

GI number: 28210030

Start: 242850

End: 244109

Strand: Direct

Name: araN [H]

Synonym: CTC00267

Alternate gene names: 28210030

Gene position: 242850-244109 (Clockwise)

Preceding gene: 28210029

Following gene: 28210032

Centisome position: 8.68

GC content: 22.46

Gene sequence:

>1260_bases
TTGAGTGGTGATTATTTTATGAGGTACATAAATATGAAAAAATATAGTGTTTTATCAATTATAATAATACTAATAATTTT
TAATTTAATTGCATGTAAAAATAAAGATAATATTAGTACTTTAGACAAAAATTCTAGAGGAGATCTATCTATATCAGTTC
CTAGGGAATTGATACCTTATATGAATCAATATACTGAAGAATTTAACAAGTATTATCCAAATGTTAAGGTTAATATAAGT
TTAGAAAAAGATATATCAAAAGGGAAAAAAGAAACAGATATTATAATTGTAAAAAGTGAGCATGCAAAATATTTTATAAA
TAAATTTAAAGACGACTTTTTAAATCTAGAAGAGCTTTTATCAAAGTATAGAAAAAACTTTAAAGATTCAAATTTAGAAG
CTGTATCTTCAGACAAAGGTATTCATGGAATAGATTTAAGTAGTAATCCTTACTTAATGATATATAGAAAAGATGTATAT
GAAAAGTGTAATATAAATATAGAAGATATAAAAACTTGGCATGATTATGTAGAAAATAGTAGATATATAAATAAAAAATT
AAATAAGAATTATAAGTTCATGCATAATTACAATAATATAGATTTATATGATATATTTTTAAATCAGCTAGGAAGAGGAT
ATAAAGATGAAAAGGAAAATAAAACTATAGTTAGTGGAGAAGCTATAAGAGCTGTTGAGCTAATAAATATTTTTAATAAA
AATCAAATAATTTATAGAGAAGAAAATAACTCCTTAGTAGAGGCTTTAAAGAGCGAAGAAGTTGTGTCCACTATATGTAC
AGCTACAGATGTATATAACATTATGGAAAAGCTACCTAGCATGAAAGGGCAGTATGAAATAAAAAAGATACCTGGATTTA
TTCTAGCAGGAAATAGAAATGTAAGCAGAAAAGGATATAGTGTTTTAGTTTTTAAAGGGAGGAATAATAAAGCTTCAAGA
ACATTTTTGAAGTTTATGATAGAAAATGAACAATTTCAGGAAAAAATGTTTAAAAATGAAAAAATACTACCTTTTAATAT
GAATGTTTACAAATCAAAAAGTCTAAATAAAAAAGAAGACTTTTTTAATGATAAAAATATATTTAAACTAATGTATGATG
TATATAAAAAATCCCCTAATATAAAATATAATGAGGATTACGAAGATATAAGAAAAAATATAAATAAAACTTTAAAAATA
ATTAATAATGAAGATTTTAACATAGAAAAGTTTATACAAGAAGTATCTAAAAAGAAGTAG

Upstream 100 bases:

>100_bases
TAAAAATATATTAAAAAGCTGCTAAAATTATAGCAGCTTTTTAATATATTTTGACAATATGATTTTATTAAACTATGATT
AAAATAATTATATTAAAATA

Downstream 100 bases:

>100_bases
ACAATATATAAAAGGCTTAATTTTTAATTAAGCCTTTTATATATTGTTAGAAATAATACTGTTATATACATTAAGAGTAT
TTTTAGCTGTATTTTCCCAA

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MSGDYFMRYINMKKYSVLSIIIILIIFNLIACKNKDNISTLDKNSRGDLSISVPRELIPYMNQYTEEFNKYYPNVKVNIS
LEKDISKGKKETDIIIVKSEHAKYFINKFKDDFLNLEELLSKYRKNFKDSNLEAVSSDKGIHGIDLSSNPYLMIYRKDVY
EKCNINIEDIKTWHDYVENSRYINKKLNKNYKFMHNYNNIDLYDIFLNQLGRGYKDEKENKTIVSGEAIRAVELINIFNK
NQIIYREENNSLVEALKSEEVVSTICTATDVYNIMEKLPSMKGQYEIKKIPGFILAGNRNVSRKGYSVLVFKGRNNKASR
TFLKFMIENEQFQEKMFKNEKILPFNMNVYKSKSLNKKEDFFNDKNIFKLMYDVYKKSPNIKYNEDYEDIRKNINKTLKI
INNEDFNIEKFIQEVSKKK

Sequences:

>Translated_419_residues
MSGDYFMRYINMKKYSVLSIIIILIIFNLIACKNKDNISTLDKNSRGDLSISVPRELIPYMNQYTEEFNKYYPNVKVNIS
LEKDISKGKKETDIIIVKSEHAKYFINKFKDDFLNLEELLSKYRKNFKDSNLEAVSSDKGIHGIDLSSNPYLMIYRKDVY
EKCNINIEDIKTWHDYVENSRYINKKLNKNYKFMHNYNNIDLYDIFLNQLGRGYKDEKENKTIVSGEAIRAVELINIFNK
NQIIYREENNSLVEALKSEEVVSTICTATDVYNIMEKLPSMKGQYEIKKIPGFILAGNRNVSRKGYSVLVFKGRNNKASR
TFLKFMIENEQFQEKMFKNEKILPFNMNVYKSKSLNKKEDFFNDKNIFKLMYDVYKKSPNIKYNEDYEDIRKNINKTLKI
INNEDFNIEKFIQEVSKKK
>Mature_418_residues
SGDYFMRYINMKKYSVLSIIIILIIFNLIACKNKDNISTLDKNSRGDLSISVPRELIPYMNQYTEEFNKYYPNVKVNISL
EKDISKGKKETDIIIVKSEHAKYFINKFKDDFLNLEELLSKYRKNFKDSNLEAVSSDKGIHGIDLSSNPYLMIYRKDVYE
KCNINIEDIKTWHDYVENSRYINKKLNKNYKFMHNYNNIDLYDIFLNQLGRGYKDEKENKTIVSGEAIRAVELINIFNKN
QIIYREENNSLVEALKSEEVVSTICTATDVYNIMEKLPSMKGQYEIKKIPGFILAGNRNVSRKGYSVLVFKGRNNKASRT
FLKFMIENEQFQEKMFKNEKILPFNMNVYKSKSLNKKEDFFNDKNIFKLMYDVYKKSPNIKYNEDYEDIRKNINKTLKII
NNEDFNIEKFIQEVSKKK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 49690; Mature: 49559

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGDYFMRYINMKKYSVLSIIIILIIFNLIACKNKDNISTLDKNSRGDLSISVPRELIPY
CCCHHEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCHHHHHH
MNQYTEEFNKYYPNVKVNISLEKDISKGKKETDIIIVKSEHAKYFINKFKDDFLNLEELL
HHHHHHHHHHHCCCEEEEEEEHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCHHHHH
SKYRKNFKDSNLEAVSSDKGIHGIDLSSNPYLMIYRKDVYEKCNINIEDIKTWHDYVENS
HHHHHCCCCCCCEECCCCCCCEEEECCCCCEEEEEECCHHHHHCCCHHHHHHHHHHHHCC
RYINKKLNKNYKFMHNYNNIDLYDIFLNQLGRGYKDEKENKTIVSGEAIRAVELINIFNK
HHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHCC
NQIIYREENNSLVEALKSEEVVSTICTATDVYNIMEKLPSMKGQYEIKKIPGFILAGNRN
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCC
VSRKGYSVLVFKGRNNKASRTFLKFMIENEQFQEKMFKNEKILPFNMNVYKSKSLNKKED
CCCCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHCCCCEEEECCCHHCCCCCCCHHH
FFNDKNIFKLMYDVYKKSPNIKYNEDYEDIRKNINKTLKIINNEDFNIEKFIQEVSKKK
HCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHEEEECCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
SGDYFMRYINMKKYSVLSIIIILIIFNLIACKNKDNISTLDKNSRGDLSISVPRELIPY
CCHHEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCHHHHHH
MNQYTEEFNKYYPNVKVNISLEKDISKGKKETDIIIVKSEHAKYFINKFKDDFLNLEELL
HHHHHHHHHHHCCCEEEEEEEHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCHHHHH
SKYRKNFKDSNLEAVSSDKGIHGIDLSSNPYLMIYRKDVYEKCNINIEDIKTWHDYVENS
HHHHHCCCCCCCEECCCCCCCEEEECCCCCEEEEEECCHHHHHCCCHHHHHHHHHHHHCC
RYINKKLNKNYKFMHNYNNIDLYDIFLNQLGRGYKDEKENKTIVSGEAIRAVELINIFNK
HHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHCC
NQIIYREENNSLVEALKSEEVVSTICTATDVYNIMEKLPSMKGQYEIKKIPGFILAGNRN
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCC
VSRKGYSVLVFKGRNNKASRTFLKFMIENEQFQEKMFKNEKILPFNMNVYKSKSLNKKED
CCCCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHCCCCEEEECCCHHCCCCCCCHHH
FFNDKNIFKLMYDVYKKSPNIKYNEDYEDIRKNINKTLKIINNEDFNIEKFIQEVSKKK
HCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHEEEECCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]